Miyakogusa Predicted Gene
- Lj1g3v3833930.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3833930.1 Non Chatacterized Hit- tr|I1L673|I1L673_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52547
PE,34.93,6e-18,"Winged helix" DNA-binding domain,NULL; seg,NULL;
Rad21_Rec8_N,Rad21/Rec8-like protein, N-terminal; ,CUFF.31211.1
(943 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma16g06470.1 129 2e-29
Glyma19g25040.1 122 2e-27
Glyma19g25030.1 109 1e-23
Glyma09g38310.1 97 7e-20
Glyma18g48020.1 97 1e-19
Glyma19g09380.1 80 9e-15
Glyma08g16090.1 76 2e-13
Glyma19g09820.1 65 3e-10
Glyma19g09850.1 64 5e-10
Glyma19g09690.1 56 2e-07
Glyma0382s00200.1 55 3e-07
Glyma19g10010.1 55 3e-07
Glyma19g09800.1 55 3e-07
Glyma19g09540.1 55 3e-07
Glyma19g09440.1 55 3e-07
Glyma19g09750.1 55 3e-07
Glyma19g09490.1 54 8e-07
Glyma19g09590.1 54 1e-06
Glyma0096s00240.1 54 1e-06
>Glyma16g06470.1
Length = 536
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Query: 838 NLINEEINSCETENSKLEAGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSEVVGGRDRK 897
NLI+EEINSC T S+ AGWS RT K AS LH+ F K++E D +NFS+V GG+ RK
Sbjct: 429 NLIDEEINSCATNESESLAGWSGRTGKVASCLHQSFLHARKERE-DTINFSQVFGGQARK 487
Query: 898 ESARMFYELLVLKTTNYVNVKQDKAYEDIAVSKLPKFDQTFGADGN 943
ESA +FYE+LVLKT+ YV+VKQ +AY DIA+ +LPK DQ F DG
Sbjct: 488 ESALLFYEVLVLKTSGYVDVKQQEAYGDIAICRLPKLDQIFLCDGG 533
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 542 QKNVSFEDG-TPSSIPEQSKNLDVTPQSRFQGHSVGIPKPGTTTSDFIPISKRAVRKPGH 600
Q+NVS ED S IP +SKN+D TPQS+FQG+S G P+ + T + + +S A R
Sbjct: 223 QENVSDEDDERLSVIPPKSKNVDATPQSKFQGYSAGRPQRDSATKESLHVSTPAARDHPP 282
Query: 601 LSRKRKPVIDKMTVLSDKVLKRSLIDTSDLIS--NRRQFRPTLLSKR-----RESRISSL 653
RKR+ ++D+M +L KV+++++ DL+ R+ R TLL+ R RES SSL
Sbjct: 283 FLRKRRIILDRMILLPSKVVRKNIESAKDLLRFPFPRESRRTLLNARCVKKHRESPTSSL 342
Query: 654 PDGFNESFFPCFLQQLQSLFSK-KMKISDSLEIVEPPERLDVSKSQTVGSPEHIETSLRT 712
PD F E PC +LQ FSK KMK+ +SL+IVE P DV +S T G L +
Sbjct: 343 PDRFYEPLLPCSSSELQLQFSKRKMKLPNSLKIVETPGNPDVPESPTAG-------PLLS 395
Query: 713 PPQGLDPLVTNETPGALDV 731
P Q L ETP LDV
Sbjct: 396 PSQSSFSLEIEETPRMLDV 414
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 35/208 (16%)
Query: 27 DPMWVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYLV------------- 73
DP+ +AA+ +K LKK QV+D DISS + + ++ + + V+ +L+
Sbjct: 12 DPVRIAAFCFKNLKKTQVLDADISSAV--VFTVRLESSCFCVVVFLMQKNGDGGECVFMF 69
Query: 74 -LGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDL 132
L + R K + Y + +C + F +A ++ + PE L+ + RFELDA +L
Sbjct: 70 FLFLTRFCKKWMVYPI-ECWAI------FFLALSEYS--PERLNMCLRTATRFELDALEL 120
Query: 133 DILEDDGG------DHIAPKEKITL--KEVLSKTERSVQFSHDKFEDFDXXXXXXXAHNS 184
D LED GG H AP E+ITL KE++ TE FSH+KFE+FD
Sbjct: 121 DGLEDAGGKLLSS*GHTAPPEEITLGDKEIVCSTEGFGLFSHEKFEEFDVGENTSSFDQD 180
Query: 185 LVEH--FHRLMMGMDFEDSPPDSSINLV 210
+V + +L+ MD E SP +S +L+
Sbjct: 181 IVGNALLSKLLNMMDDEVSPQNSPTDLL 208
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 396 FQKKVSFED--RTPTIPAQSKTLDVTPQSKFQGHSVGIPKPGTTTSDFMPIPTPAVRE-- 451
FQ+ VS ED R IP +SK +D TPQSKFQG+S G P+ + T + + + TPA R+
Sbjct: 222 FQENVSDEDDERLSVIPPKSKNVDATPQSKFQGYSAGRPQRDSATKESLHVSTPAARDHP 281
Query: 452 PGLLSRKRKSDKMTVLPNE 470
P L R+ D+M +LP++
Sbjct: 282 PFLRKRRIILDRMILLPSK 300
>Glyma19g25040.1
Length = 105
Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/103 (63%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 840 INEEINSCETENSKLEAGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSEVVGGRDRKES 899
++EE NS T S+L AGWS RTR+ AS LH+ F KQ+E D VNFS+V GGR RKES
Sbjct: 1 MDEETNSRGTNESELLAGWSGRTREVASCLHQSFLHARKQRE-DTVNFSQVFGGRARKES 59
Query: 900 ARMFYELLVLKTTNYVNVKQDKAYEDIAVSKLPKFDQTFGADG 942
A +FYE+LVLKTT YV+V+Q+KAY DIA+S+LPK DQTF DG
Sbjct: 60 ALLFYEVLVLKTTGYVDVEQNKAYGDIAISRLPKLDQTFLFDG 102
>Glyma19g25030.1
Length = 266
Score = 109 bits (272), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/104 (53%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Query: 54 EKILQGEMDVTSYRVLAYLVLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPE 113
+KILQ EMDV SYRVL YL++G++RI+SKKVEY+L DCN+VL K +FV+ + E
Sbjct: 33 DKILQ-EMDVVSYRVLGYLLVGIIRIFSKKVEYVLEDCNEVLIKINKFVV-NKEGIVRVE 90
Query: 114 TLHTFVTIPERFELDAFDLDILEDDGGDHIAPKEKITLKEVLSK 157
TL VTIP+R ELD F+LD LE+ H AP E+ITL++ +++
Sbjct: 91 TLRMPVTIPDRLELDVFELDELENVDRGHTAPPEEITLRDKVNR 134
>Glyma09g38310.1
Length = 1071
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 14/170 (8%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M ++ + + + P+ W+AA+ +KL+K QV DTDI ++ IL E+ + + R+ ++L
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEIPI-ALRLSSHL 59
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPE---TLHTFVTIPERFELDA 129
+LGVVRIYS+KV YL DC++ L K K+ +T + PE + +T+PE F+LD
Sbjct: 60 LLGVVRIYSRKVNYLFDDCSEALLKIKQ-AFRSTAVDLPPEESTAPYHSITLPETFDLDD 118
Query: 130 FDL---DILEDDGGD-HIAPKEKITLKEVLSKTERSV-QFSHD-KFEDFD 173
F+L DIL+ + D H++ +E+ITL++ + + QF D +F D D
Sbjct: 119 FELPDNDILQGNYVDHHVSTREQITLQDSMEGVIYTTSQFGLDERFGDGD 168
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 860 ARTRKFASHLHRVF--QDQGKQKEGDDVNFSEVVGGRDRKESARMFYELLVLKTTNYVNV 917
R A +L VF +D +KE ++ ++ G+ RKE++RMF+E LVLKT +YV+V
Sbjct: 993 GAVRAVAKYLQTVFDKEDLHGRKE---LHLDNLLVGKTRKEASRMFFETLVLKTRDYVHV 1049
Query: 918 KQDKAYEDIAVSKLPKFDQT 937
+Q K + ++++ K Q+
Sbjct: 1050 EQTKPFANVSIKPRMKLMQS 1069
>Glyma18g48020.1
Length = 1153
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 103/170 (60%), Gaps = 14/170 (8%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M ++ + + + P+ W+AA+ +KL+K QV DTDI ++ IL E+ + + R+ ++L
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPI-ALRLSSHL 59
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPE---TLHTFVTIPERFELDA 129
+LGVVRIYS+KV YL DC++ L K K+ +T + PE + +T+PE F+LD
Sbjct: 60 LLGVVRIYSRKVNYLFDDCSEALLKIKQ-AFRSTAVDLPPEESTAPYHSITLPETFDLDD 118
Query: 130 FDL---DILEDDGGD-HIAPKEKITLKEVLSKTERSV-QFSHD-KFEDFD 173
F+L DIL+ + D H++ +E+ITL++ + + QF D +F D D
Sbjct: 119 FELPDNDILQGNYVDHHVSTREQITLQDSMEGVVYTTSQFGLDERFGDGD 168
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 60/86 (69%), Gaps = 7/86 (8%)
Query: 846 SCETENSKLE-AGWSARTRKFASHLHRVF--QDQGKQKEGDDVNFSEVVGGRDRKESARM 902
SC E + LE +GWS+RTR A++L VF +D +KE ++ + ++ G+ RKE++RM
Sbjct: 1061 SC-AEGTNLENSGWSSRTRAVANYLQTVFDKEDLHGRKE---LHLNNLLVGKTRKEASRM 1116
Query: 903 FYELLVLKTTNYVNVKQDKAYEDIAV 928
F+E LVLKT +YV+V+Q K + ++++
Sbjct: 1117 FFETLVLKTRDYVHVEQTKPFANVSI 1142
>Glyma19g09380.1
Length = 187
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 67 RVLAYLVLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFE 126
RVL YL+ G +RI+S KVEY+L DCN+VL KF +FVI + E+ VTIPERFE
Sbjct: 7 RVLGYLLFGTIRIFSIKVEYVLEDCNEVLIKFNKFVI-NNEGLVCVESFRLPVTIPERFE 65
Query: 127 LDAFDLDILEDDGGD 141
LDAF+L LE+ G D
Sbjct: 66 LDAFELHELENAGRD 80
>Glyma08g16090.1
Length = 629
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M +++ + + P+ W+AA+ +LKK+ TDI S + +I+ + + + R+ +L
Sbjct: 1 MFYSQTFLARKGPLSTVWIAAHLQHRLKKSHYTATDIPSTVLRIMDPGVPI-ALRMSGHL 59
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTK----RNAHPETLHTFVTIPERFELD 128
+LGVVRIYSKKVEYL DC L+ + AT + A P + VT+P F+LD
Sbjct: 60 LLGVVRIYSKKVEYLHQDCKDALTGLHK-AFATLQFAQPEEARPAPFQS-VTLPGTFDLD 117
Query: 129 AFDLD 133
A ++D
Sbjct: 118 AQNID 122
>Glyma19g09820.1
Length = 179
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILEDD 138
I+ KKVEY+L DCN+VL K +FV+ + ETL VTIPERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTIPERFELDAFELDEPEDA 59
Query: 139 GGDHIAPKEKITLKEVLSKTERSVQFSHDKF 169
G + + + K + KTE FS +K
Sbjct: 60 GSNTLLSETKF-----VCKTEGFGLFSKEKL 85
>Glyma19g09850.1
Length = 202
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILEDD 138
I+ KKVEY+L DCN+VL K +FV+ + ETL VTIPERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTIPERFELDAFELDEPEDA 59
Query: 139 GGDHIAPKEKITLKEVLSKTERSVQFSHDK 168
G + + + K + KTE FS +K
Sbjct: 60 GSNTLLSETKF-----VCKTEGFGLFSKEK 84
>Glyma19g09690.1
Length = 58
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
I+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDDPED 58
>Glyma0382s00200.1
Length = 193
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 84 VEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILEDDGGDHI 143
VEY+L DCN+VL K +FV+ + ETL VT PERFELDAF LD ED G + +
Sbjct: 37 VEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFVLDEPEDAGSNTL 95
Query: 144 APKEKITLKEVLSKTERSVQFSHDKF 169
+ K + KTE FS +K
Sbjct: 96 LSETKF-----VCKTEGFGLFSKEKL 116
>Glyma19g10010.1
Length = 58
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
I+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma19g09800.1
Length = 58
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
I+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma19g09540.1
Length = 58
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
I+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma19g09440.1
Length = 58
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
I+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma19g09750.1
Length = 58
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/59 (55%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 79 IYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
I+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 1 IFYKKVEYVLEDCNEVLIKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma19g09490.1
Length = 58
Score = 53.9 bits (128), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 80 YSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
+ KKVEY+L DCN+VL K +FVI + ETL VT PERFELDAF+LD ED
Sbjct: 2 FYKKVEYVLEDCNEVLVKINKFVI-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma19g09590.1
Length = 58
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 80 YSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 2 FYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58
>Glyma0096s00240.1
Length = 58
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 80 YSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILED 137
+ KKVEY+L DCN+VL K +FV+ + ETL VT PERFELDAF+LD ED
Sbjct: 2 FYKKVEYVLEDCNEVLVKINKFVV-NKEGLVCVETLCMPVTKPERFELDAFELDEPED 58