Miyakogusa Predicted Gene

Lj1g3v3508280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3508280.1 tr|B9GNJ5|B9GNJ5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_851473
PE=4,48.15,2e-16, ,CUFF.30812.1
         (145 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g37740.1                                                       222   1e-58
Glyma08g47030.1                                                       216   7e-57

>Glyma18g37740.1 
          Length = 469

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/144 (73%), Positives = 118/144 (81%)

Query: 1   MAECVASPFGIKLNIQRNPVRERGFSRHSANFSTVGRKYSRNGCQFLHFSSWKTCELSVF 60
           MAECVAS F +KLN QR PVRERGFS    +  +V RKYSRNGC+F+HFS WKT ELSVF
Sbjct: 1   MAECVASAFCVKLNAQRRPVRERGFSGQITSLKSVQRKYSRNGCKFVHFSMWKTFELSVF 60

Query: 61  RAIDLKITPCMRTIPLKCTGLGALVDFNGAASSGLVPVVDQVLLMGSIFLTYMAGVIPVE 120
            A  LK TP ++  PLKC GLGALVDFNGA +S LVPVVDQ+LL+GSIFLTYMAGVIPVE
Sbjct: 61  GATHLKFTPHLQEFPLKCIGLGALVDFNGATASDLVPVVDQMLLLGSIFLTYMAGVIPVE 120

Query: 121 KSYTNYQKIDSDKNVFPESSDNSG 144
           KSY +YQK +SDKNVFPESSD SG
Sbjct: 121 KSYASYQKTNSDKNVFPESSDISG 144


>Glyma08g47030.1 
          Length = 491

 Score =  216 bits (550), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 104/144 (72%), Positives = 116/144 (80%)

Query: 1   MAECVASPFGIKLNIQRNPVRERGFSRHSANFSTVGRKYSRNGCQFLHFSSWKTCELSVF 60
           MAECVAS F +KL  QR PVRERGFSR   N  T  RKYSR+GC+F+HFS+WKT +LSVF
Sbjct: 1   MAECVASAFCVKLVTQRRPVRERGFSRQITNLKTFQRKYSRSGCKFVHFSTWKTFDLSVF 60

Query: 61  RAIDLKITPCMRTIPLKCTGLGALVDFNGAASSGLVPVVDQVLLMGSIFLTYMAGVIPVE 120
               LK TP ++ +PLKC GLGALVDFNGA +S LVPVV Q+LLMGSIFLTYMAGVIPVE
Sbjct: 61  GTTHLKFTPRLQELPLKCIGLGALVDFNGAKASDLVPVVGQMLLMGSIFLTYMAGVIPVE 120

Query: 121 KSYTNYQKIDSDKNVFPESSDNSG 144
           KSY +YQK  SDKNVFPESSD SG
Sbjct: 121 KSYASYQKTISDKNVFPESSDISG 144