Miyakogusa Predicted Gene

Lj1g3v3444150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3444150.1 tr|A9RJ26|A9RJ26_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=Pb PE=4
SV=1,57.32,7e-19,Chlorophyll a-b binding protein,Chlorophyll a/b
binding protein domain,CUFF.30751.1
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g16250.1                                                       143   4e-35
Glyma18g40280.1                                                       106   6e-24
Glyma07g16250.2                                                        96   7e-21

>Glyma07g16250.1 
          Length = 118

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 83/102 (81%), Gaps = 5/102 (4%)

Query: 13  SFYSTNQQVYL--NRSATHKNKNRVSFFRVQAAAKPPAGVEFPKVQPQFKAPFLGFTKTA 70
           SF S N  V+L  NRS  ++ K RVSF  V  AAKPP GVE PKVQPQFK PFLGFTKTA
Sbjct: 20  SFNSGNHSVFLLQNRS-LNRPKKRVSF--VVQAAKPPIGVEIPKVQPQFKPPFLGFTKTA 76

Query: 71  EVWNSRACMIGLIGTFIVELIINKGILQVIGVEIGKGLNLPL 112
           EVWNSRACMIG+IG FIVE IINKGILQVIGV++GKGLN+PL
Sbjct: 77  EVWNSRACMIGIIGVFIVEFIINKGILQVIGVDVGKGLNIPL 118


>Glyma18g40280.1 
          Length = 115

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 70/102 (68%), Gaps = 13/102 (12%)

Query: 13  SFYSTNQQVYL--NRSATHKNKNRVSFFRVQAAAKPPAGVEFPKVQPQFKAPFLGFTKTA 70
           S  S N   +L  NRS  ++ K RVSF  V  AAKP   +  P        PFLG TKTA
Sbjct: 20  SINSRNLSFFLLQNRS-LNRPKKRVSF--VVQAAKPTVAIGHP--------PFLGLTKTA 68

Query: 71  EVWNSRACMIGLIGTFIVELIINKGILQVIGVEIGKGLNLPL 112
           E+WNSRACMIG+IG FIVE IINKGILQVIG+E+GKGLNLPL
Sbjct: 69  EIWNSRACMIGIIGVFIVEFIINKGILQVIGLEVGKGLNLPL 110


>Glyma07g16250.2 
          Length = 99

 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 66/102 (64%), Gaps = 24/102 (23%)

Query: 13  SFYSTNQQVYL--NRSATHKNKNRVSFFRVQAAAKPPAGVEFPKVQPQFKAPFLGFTKTA 70
           SF S N  V+L  NRS  ++ K RVSF  V  AAKPP GVE PKVQPQFK PFLGFTKTA
Sbjct: 20  SFNSGNHSVFLLQNRS-LNRPKKRVSF--VVQAAKPPIGVEIPKVQPQFKPPFLGFTKTA 76

Query: 71  EVWNSRACMIGLIGTFIVELIINKGILQVIGVEIGKGLNLPL 112
           E                   IINKGILQVIGV++GKGLN+PL
Sbjct: 77  E-------------------IINKGILQVIGVDVGKGLNIPL 99