Miyakogusa Predicted Gene

Lj1g3v3330680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3330680.1 Non Chatacterized Hit- tr|C3YPG3|C3YPG3_BRAFL
Putative uncharacterized protein OS=Branchiostoma flor,30.43,1e-18,GB
DEF: HYPOTHETICAL PROTEIN,NULL; FAMILY NOT NAMED,NULL; seg,NULL;
zf-primase,Zinc finger, Mcm10/Dn,CUFF.30484.1
         (418 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g00510.1                                                       533   e-151

>Glyma04g00510.1 
          Length = 409

 Score =  533 bits (1372), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/400 (69%), Positives = 309/400 (77%), Gaps = 10/400 (2%)

Query: 21  RVLETPPGSPSPGYLTDSDSDGAPNQRDKN-PDMSVFRNAVQDCXXXXXXXXXXXXXXXX 79
           RV ETPP SP+     D + +  PNQR+++ PDMSVF++A+QDC                
Sbjct: 18  RVAETPPSSPTISDDDDDELE-LPNQRERDKPDMSVFKSALQDCLPYDPPKPTNKPVINV 76

Query: 80  XATHAKDSDVEKFSGLRIRDQLLTPAELRDSFSDIRFVRLPVIKNLFIGDSFSGSWATVG 139
                 DS +EKFSGLRIR+QLLTPAEL++ FSDIRFVRL VIKN  +GD+ SGSWATVG
Sbjct: 77  ------DSHLEKFSGLRIRNQLLTPAELKEHFSDIRFVRLSVIKNSLVGDTVSGSWATVG 130

Query: 140 VLTEKGIQRTSSSGKGYCIWKIGCLDENTVSLFLFGDAYLRNKNEQAGAVFALFDCSVRK 199
           VLTEKG Q+TSS+GK YCIWKIGCLDE TVSLFLFGDAY  N  EQAG VFALF+ +VRK
Sbjct: 131 VLTEKGTQKTSSTGKSYCIWKIGCLDETTVSLFLFGDAYQMNMQEQAGTVFALFNSTVRK 190

Query: 200 DAKGNGFSLSIYSPSQIKKMGTSVDYGVCKGGRADGMACTMVINKRHGAYCKFHKSKTSE 259
           D  GNGFSLSIYS  QI KMGTSVDYGVCKG R DGMACT+VINKRHG YCK+HKSK SE
Sbjct: 191 DNAGNGFSLSIYSTRQIMKMGTSVDYGVCKGKRTDGMACTLVINKRHGTYCKYHKSKASE 250

Query: 260 KYSTTRTELKGGNLRTAFRPRDQYLRSEGIFVVDPLADKTNLKKSQPVKLMSVDGLRKAL 319
           KYS+ RTELKGGNLRTAFRP   YL+SEGI++VDPLADKTNLKKSQPVKL+SVDG+RKAL
Sbjct: 251 KYSSMRTELKGGNLRTAFRPMG-YLKSEGIYLVDPLADKTNLKKSQPVKLLSVDGIRKAL 309

Query: 320 SNAGKVTTTIRSQGIRFLSEVAGNSDPKITNKGPKTPKERRTSAEKRKSSFMNVGSS-VI 378
           SNAGKVTT   SQGIRFLSEVA  SDPK+ NKG K P  +    EKRKSSF NVGSS VI
Sbjct: 310 SNAGKVTTASHSQGIRFLSEVAAKSDPKMKNKGSKFPNVQNKWTEKRKSSFPNVGSSPVI 369

Query: 379 RNQQFDVKRKKTDGQDLVDKTTKSSGKMIELDFVSSDEDF 418
            N+Q   KR K DGQ L DKT K   KMIE+D VSSDEDF
Sbjct: 370 GNRQSGEKRIKPDGQVLADKTLKRIEKMIEIDLVSSDEDF 409