Miyakogusa Predicted Gene
- Lj1g3v3329510.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3329510.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,58.26,2e-17,seg,NULL; HMG_box,High mobility group, superfamily;
HMG-box,High mobility group, superfamily; no des,CUFF.30397.1
(118 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma10g44040.1 134 2e-32
Glyma20g38760.1 114 3e-26
Glyma04g02210.1 77 5e-15
Glyma04g12530.1 69 9e-13
Glyma06g48010.1 69 1e-12
Glyma10g44030.1 60 6e-10
>Glyma10g44040.1
Length = 354
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Query: 2 VKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPNR 61
+KGVLY++PQ P+L AS H S AKNNN A LGV DPAHPKPNR
Sbjct: 153 LKGVLYQAPQNPVLVAS---HHSASAKNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNR 209
Query: 62 SGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
SGYNFFFAEQHARLKLL+ KDR+ISRMIGELWNKLKE E++V
Sbjct: 210 SGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTV 252
>Glyma20g38760.1
Length = 326
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 70/103 (67%), Gaps = 3/103 (2%)
Query: 2 VKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPNR 61
+KGVLY++PQ P+L AS + + + LGV DPAHPKPNR
Sbjct: 127 LKGVLYQAPQNPVLTASHHSASANNNNASAS---LGVHRRRRRKKSEIKRRDPAHPKPNR 183
Query: 62 SGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
SGYNFFFAEQHARLKLL+ KDR+ISRMIGELWNKLKE E++V
Sbjct: 184 SGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTV 226
>Glyma04g02210.1
Length = 322
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 1 MVKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPN 60
+++GVLY P+ + P S H+S I N P G + DP +PKPN
Sbjct: 192 VLRGVLYH-PEQLVPPPSIPKHESAIVPINRKPHRSGRRKKNKRRW------DPNYPKPN 244
Query: 61 RSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSVSNLLNL 110
RSGYNFFFAE+H LK L ++R+ ++MIG+ WN L ER V + L
Sbjct: 245 RSGYNFFFAEKHYTLKTLYPNREREFTKMIGQSWNSLSPEERMVYQNIGL 294
>Glyma04g12530.1
Length = 313
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 2 VKGVLYESPQTPMLPASASHHQSIIAKNNNTPAVLGVQXXXXXXXXXXXXXDPAHPKPNR 61
+KGVL+ P S S H + + N G DP PK NR
Sbjct: 188 LKGVLFHVPDN----VSQSSHAEGTSSSQNLGD--GTSNSQSRKRAKYAPRDPFRPKSNR 241
Query: 62 SGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
SGYNFFFAE +ARLK ++R IS+ IG LWN L E ER V
Sbjct: 242 SGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQV 284
>Glyma06g48010.1
Length = 339
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 36/52 (69%)
Query: 53 DPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRMIGELWNKLKEPERSV 104
DP PK NRSGYNFFFAE +ARLK ++R IS+ IG LWN L E ER V
Sbjct: 259 DPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKRIGFLWNNLSEAERQV 310
>Glyma10g44030.1
Length = 117
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 53 DPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRMI 90
+PA PKP ++GYNFFFAE+HARLK +Q K+ DI RMI
Sbjct: 79 NPALPKPKKTGYNFFFAEEHARLKPYHQGKETDIGRMI 116