Miyakogusa Predicted Gene

Lj1g3v3316260.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3316260.2 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,96.13,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.2
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g06370.1                                                       295   2e-80
Glyma19g06340.1                                                       295   2e-80
Glyma13g07610.1                                                       295   2e-80
Glyma19g06340.5                                                       285   1e-77
Glyma19g06340.6                                                       219   9e-58
Glyma18g53430.1                                                       209   1e-54
Glyma13g00910.1                                                       187   7e-48
Glyma19g06340.2                                                       161   4e-40
Glyma19g06340.4                                                       161   4e-40
Glyma19g06340.3                                                       160   8e-40
Glyma19g06390.1                                                       147   5e-36
Glyma18g39900.1                                                       136   1e-32
Glyma08g48060.1                                                       125   3e-29
Glyma14g10170.1                                                       115   2e-26
Glyma19g06420.1                                                        94   1e-19

>Glyma19g06370.1 
          Length = 178

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 147/162 (90%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPPVGKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAA 139
              QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFGC+DA+
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDAS 136

Query: 140 QVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           QVLKEL EA  AYPN F+RIIGFDNVRQVQCISFIA++P G+
Sbjct: 137 QVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


>Glyma19g06340.1 
          Length = 178

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 147/162 (90%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPPVGKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAA 139
              QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFGC+DA+
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDAS 136

Query: 140 QVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           QVLKEL EA  AYPN F+RIIGFDNVRQVQCISFIA++P G+
Sbjct: 137 QVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


>Glyma13g07610.1 
          Length = 178

 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 147/162 (90%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPP+GKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAA 139
              QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFGC+DA+
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDAS 136

Query: 140 QVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181
           QVLKEL EA  AYPN F+RIIGFDNVRQVQCISFIA++P G+
Sbjct: 137 QVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


>Glyma19g06340.5 
          Length = 170

 Score =  285 bits (730), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 132/154 (85%), Positives = 140/154 (90%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPPVGKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAA 139
              QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYYDGRYWTMWKLPMFGC+DA+
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDAS 136

Query: 140 QVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISF 173
           QVLKEL EA  AYPN F+RIIGFDNVRQVQCISF
Sbjct: 137 QVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170


>Glyma19g06340.6 
          Length = 123

 Score =  219 bits (559), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 100/123 (81%), Positives = 110/123 (89%)

Query: 59  MQVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPG 118
           M VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPG
Sbjct: 1   MHVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPG 60

Query: 119 YYDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRP 178
           YYDGRYWTMWKLPMFGC+DA+QVLKEL EA  AYPN F+RIIGFDNVRQVQCISFIA++P
Sbjct: 61  YYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 120

Query: 179 AGY 181
            G+
Sbjct: 121 PGF 123


>Glyma18g53430.1 
          Length = 152

 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/151 (69%), Positives = 118/151 (78%), Gaps = 15/151 (9%)

Query: 21  QASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPLT 80
           ++SMVAPFTGLKSMAGFPV KTN DI SIA+N  RVQCMQVWPPVGKKKFETLS+LPP +
Sbjct: 16  RSSMVAPFTGLKSMAGFPVTKTNYDINSIASNSERVQCMQVWPPVGKKKFETLSHLPPFS 75

Query: 81  TEQLLKEVEYLLRKGWVPCLEFETEKGFVYRE-NHKSPGYYDGRYWTMWKLPMFGCSDAA 139
            EQ +           V  L F+   G+V+   NH+SP Y DGRYWTMWKLPM GC+D+A
Sbjct: 76  REQFM-----------VMVLNFD---GYVWGACNHRSPEYNDGRYWTMWKLPMIGCTDSA 121

Query: 140 QVLKELDEAVKAYPNAFVRIIGFDNVRQVQC 170
           QVLK +DEAVKAYP AFVRIIGFDNVRQVQC
Sbjct: 122 QVLKGVDEAVKAYPTAFVRIIGFDNVRQVQC 152


>Glyma13g00910.1 
          Length = 172

 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 110/155 (70%), Gaps = 3/155 (1%)

Query: 26  APFTGLKSMAG--FPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPLTTEQ 83
           A F GLKS +    P   +      I +NG +  CM+ W P+  KKFETLSYLPPL+ E 
Sbjct: 13  AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 72

Query: 84  LLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLK 143
           + KE++Y+L+KGW+PCLEF+ E G V REN   PGYYDGRYWT+WKLPMF CSD++QVLK
Sbjct: 73  IAKEIDYMLKKGWIPCLEFD-ELGCVRRENSHMPGYYDGRYWTLWKLPMFACSDSSQVLK 131

Query: 144 ELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRP 178
           E+ E  + YPNA++R + FDN R +Q ++FI H+P
Sbjct: 132 EIHECRRVYPNAYIRCLAFDNQRHMQSMAFIVHKP 166


>Glyma19g06340.2 
          Length = 111

 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 79/90 (87%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPPVGKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFV 109
              QL KEVEYLLRKGW+PCLEFE E  F+
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEVNFL 106


>Glyma19g06340.4 
          Length = 142

 Score =  161 bits (407), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 78/89 (87%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPPVGKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGF 108
              QL KEVEYLLRKGW+PCLEFE E  F
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEVNF 105


>Glyma19g06340.3 
          Length = 123

 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 79/92 (85%)

Query: 20  AQASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPL 79
           A A MVAPFTGLKSMAGFP RKTNNDITSIA+NGGRVQCMQVWPPVGKKKFETLSYLP L
Sbjct: 17  AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDL 76

Query: 80  TTEQLLKEVEYLLRKGWVPCLEFETEKGFVYR 111
              QL KEVEYLLRKGW+PCLEFE E   + R
Sbjct: 77  DDAQLAKEVEYLLRKGWIPCLEFELEVTRILR 108


>Glyma19g06390.1 
          Length = 121

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/145 (55%), Positives = 87/145 (60%), Gaps = 43/145 (29%)

Query: 23  SMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPLTTE 82
           SMVAPFTGLKSMAG P RKTN+DITSIA NGGR     VWPPVGKKKF T SYLP L   
Sbjct: 20  SMVAPFTGLKSMAGIPTRKTNSDITSIATNGGR-----VWPPVGKKKFGTFSYLPDLDDA 74

Query: 83  QLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAAQVL 142
           QL KE                                      T+WK PMFGC+DA+QVL
Sbjct: 75  QLAKE--------------------------------------TIWKHPMFGCTDASQVL 96

Query: 143 KELDEAVKAYPNAFVRIIGFDNVRQ 167
           KEL EA   YPN+F+RIIGFDN+RQ
Sbjct: 97  KELQEAKTTYPNSFIRIIGFDNIRQ 121


>Glyma18g39900.1 
          Length = 131

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 87/122 (71%), Gaps = 22/122 (18%)

Query: 17  ASPA-----QASMVAPFTGLKSMAGFPVRKTNNDIT------SIANNGGRVQCMQVWPPV 65
           +SPA     + SMVAPFTGLKSMAGFPVRKTN DIT       I  +   +Q ++VWP +
Sbjct: 7   SSPAVTTVNRGSMVAPFTGLKSMAGFPVRKTNYDITYHKQHWKITMHQHTMQ-IKVWPQI 65

Query: 66  GKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETE---KGFVYRENHKSPGYYDG 122
           G KKFETLSYLPPLT EQLLKE       GW+PCLEFE E   KGFVYRENH+SPGYYDG
Sbjct: 66  G-KKFETLSYLPPLTREQLLKE------DGWIPCLEFELESVPKGFVYRENHRSPGYYDG 118

Query: 123 RY 124
            Y
Sbjct: 119 SY 120


>Glyma08g48060.1 
          Length = 89

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 68/85 (80%), Gaps = 11/85 (12%)

Query: 21  QASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFETLSYLPPLT 80
           + SMVAPFTGLKSMAGFPVRKTN DITSIA+N GR     VWPP+GKKKFETLSYLPPLT
Sbjct: 16  RGSMVAPFTGLKSMAGFPVRKTNYDITSIASNTGR-----VWPPIGKKKFETLSYLPPLT 70

Query: 81  TEQLLKEVEYLLRKGWVPCLEFETE 105
            EQLLKE       GW+PCLEFE E
Sbjct: 71  REQLLKE------DGWIPCLEFELE 89


>Glyma14g10170.1 
          Length = 135

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/94 (67%), Positives = 69/94 (73%), Gaps = 16/94 (17%)

Query: 17  ASPA-----QASMVAPFTGLKSMAGFPVRKTNNDITSIANNGGRVQCMQVWPPVGKKKFE 71
           +SPA     + SMVAPF+GLKSMAGFPVRKT  DITSIA+N GR     VWP +GKKKFE
Sbjct: 7   SSPAVTTVNRGSMVAPFSGLKSMAGFPVRKTKYDITSIASNTGR-----VWPRIGKKKFE 61

Query: 72  TLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETE 105
           T SYLPPLT EQLLKE       GW+PCLEFE E
Sbjct: 62  TPSYLPPLTREQLLKE------DGWIPCLEFELE 89


>Glyma19g06420.1 
          Length = 123

 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 67/127 (52%), Gaps = 23/127 (18%)

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VW P+GKK FETLSYLP L   QL KEVEYLLR GW+PCLEFE E   V         Y+
Sbjct: 1   VWQPIGKK-FETLSYLPNLDDAQLAKEVEYLLRNGWIPCLEFELEFSLVL---FFVSTYF 56

Query: 121 DG--RYWTMWKLPMFGCSDAAQVLKELDE-----------------AVKAYPNAFVRIIG 161
           +    +  +  + +  CS  +  +   D                  A   YPNAF+RIIG
Sbjct: 57  EEIIVFHAILMVDLSVCSTVSCTVSTTDHQDTMMDATRPCGSCLCLAKTTYPNAFIRIIG 116

Query: 162 FDNVRQV 168
           FDNVRQV
Sbjct: 117 FDNVRQV 123