Miyakogusa Predicted Gene

Lj1g3v3316260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3316260.1 tr|I3T692|I3T692_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2
SV=1,95.58,0,RuBisCO_small,Ribulose bisphosphate carboxylase small
chain, domain; RbcS,Ribulose-1,5-bisphosphate ,CUFF.30679.1
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g06370.1                                                       311   3e-85
Glyma19g06340.1                                                       311   3e-85
Glyma13g07610.1                                                       310   4e-85
Glyma19g06340.5                                                       301   2e-82
Glyma18g53430.1                                                       228   4e-60
Glyma19g06340.6                                                       219   8e-58
Glyma13g00910.1                                                       187   4e-48
Glyma19g06340.2                                                       177   4e-45
Glyma19g06340.4                                                       177   7e-45
Glyma19g06340.3                                                       176   1e-44
Glyma19g06390.1                                                       154   5e-38
Glyma18g39900.1                                                       151   3e-37
Glyma08g48060.1                                                       140   9e-34
Glyma14g10170.1                                                       130   6e-31
Glyma19g06420.1                                                        91   5e-19

>Glyma19g06370.1 
          Length = 178

 Score =  311 bits (796), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/181 (81%), Positives = 159/181 (87%), Gaps = 3/181 (1%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYY
Sbjct: 58  VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 117

Query: 121 DGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAG 180
           DGRYWTMWKLPMFGC+DA+QVLKEL EA  AYP  F+RIIGFDNVRQVQCISFIA++P G
Sbjct: 118 DGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177

Query: 181 Y 181
           +
Sbjct: 178 F 178


>Glyma19g06340.1 
          Length = 178

 Score =  311 bits (796), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/181 (81%), Positives = 159/181 (87%), Gaps = 3/181 (1%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYY
Sbjct: 58  VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 117

Query: 121 DGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAG 180
           DGRYWTMWKLPMFGC+DA+QVLKEL EA  AYP  F+RIIGFDNVRQVQCISFIA++P G
Sbjct: 118 DGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177

Query: 181 Y 181
           +
Sbjct: 178 F 178


>Glyma13g07610.1 
          Length = 178

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 146/181 (80%), Positives = 159/181 (87%), Gaps = 3/181 (1%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VWPP+GKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYY
Sbjct: 58  VWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 117

Query: 121 DGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRPAG 180
           DGRYWTMWKLPMFGC+DA+QVLKEL EA  AYP  F+RIIGFDNVRQVQCISFIA++P G
Sbjct: 118 DGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177

Query: 181 Y 181
           +
Sbjct: 178 F 178


>Glyma19g06340.5 
          Length = 170

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 143/173 (82%), Positives = 152/173 (87%), Gaps = 3/173 (1%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPGYY
Sbjct: 58  VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 117

Query: 121 DGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISF 173
           DGRYWTMWKLPMFGC+DA+QVLKEL EA  AYP  F+RIIGFDNVRQVQCISF
Sbjct: 118 DGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170


>Glyma18g53430.1 
          Length = 152

 Score =  228 bits (580), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/171 (69%), Positives = 132/171 (77%), Gaps = 20/171 (11%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSM++S AVTT+N +S     MVAPFTGLKSMAGFPV KTN DI SIASN  RVQCMQ
Sbjct: 1   MASSMMSSPAVTTVNRSS-----MVAPFTGLKSMAGFPVTKTNYDINSIASNSERVQCMQ 55

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRE-NHKSPGY 119
           VWPPVGKKKFETLS+LPP + EQ +           V  L F+   G+V+   NH+SP Y
Sbjct: 56  VWPPVGKKKFETLSHLPPFSREQFM-----------VMVLNFD---GYVWGACNHRSPEY 101

Query: 120 YDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQC 170
            DGRYWTMWKLPM GC+D+AQVLK +DEAVKAYPTAFVRIIGFDNVRQVQC
Sbjct: 102 NDGRYWTMWKLPMIGCTDSAQVLKGVDEAVKAYPTAFVRIIGFDNVRQVQC 152


>Glyma19g06340.6 
          Length = 123

 Score =  219 bits (559), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 99/123 (80%), Positives = 109/123 (88%)

Query: 59  MQVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPG 118
           M VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E GFVYRE+++SPG
Sbjct: 1   MHVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPG 60

Query: 119 YYDGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRP 178
           YYDGRYWTMWKLPMFGC+DA+QVLKEL EA  AYP  F+RIIGFDNVRQVQCISFIA++P
Sbjct: 61  YYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 120

Query: 179 AGY 181
            G+
Sbjct: 121 PGF 123


>Glyma13g00910.1 
          Length = 172

 Score =  187 bits (476), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 109/155 (70%), Gaps = 3/155 (1%)

Query: 26  APFTGLKSMAGFPVRKTNTD--ITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLTTEQ 83
           A F GLKS +      T +      I SNG +  CM+ W P+  KKFETLSYLPPL+ E 
Sbjct: 13  AGFVGLKSNSSNLCPSTGSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDES 72

Query: 84  LLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLK 143
           + KE++Y+L+KGW+PCLEF+ E G V REN   PGYYDGRYWT+WKLPMF CSD++QVLK
Sbjct: 73  IAKEIDYMLKKGWIPCLEFD-ELGCVRRENSHMPGYYDGRYWTLWKLPMFACSDSSQVLK 131

Query: 144 ELDEAVKAYPTAFVRIIGFDNVRQVQCISFIAHRP 178
           E+ E  + YP A++R + FDN R +Q ++FI H+P
Sbjct: 132 EIHECRRVYPNAYIRCLAFDNQRHMQSMAFIVHKP 166


>Glyma19g06340.2 
          Length = 111

 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/109 (80%), Positives = 92/109 (84%), Gaps = 3/109 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFV 109
           VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E  F+
Sbjct: 58  VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVNFL 106


>Glyma19g06340.4 
          Length = 142

 Score =  177 bits (448), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 88/108 (81%), Positives = 91/108 (84%), Gaps = 3/108 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGF 108
           VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E  F
Sbjct: 58  VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVNF 105


>Glyma19g06340.3 
          Length = 123

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 92/111 (82%), Gaps = 3/111 (2%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSMI+S AVTT+N A    A MVAPFTGLKSMAGFP RKTN DITSIASNGGRVQCMQ
Sbjct: 1   MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 57

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYR 111
           VWPPVGKKKFETLSYLP L   QL KEVEYLLRKGW+PCLEFE E   + R
Sbjct: 58  VWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVTRILR 108


>Glyma19g06390.1 
          Length = 121

 Score =  154 bits (389), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 98/167 (58%), Gaps = 46/167 (27%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASS I+S  VT IN       +MVAPFTGLKSMAG P RKTN+DITSIA+NGGR     
Sbjct: 1   MASSPISSPVVTIINRVG---VSMVAPFTGLKSMAGIPTRKTNSDITSIATNGGR----- 52

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VWPPVGKKKF T SYLP L   QL KE                                 
Sbjct: 53  VWPPVGKKKFGTFSYLPDLDDAQLAKE--------------------------------- 79

Query: 121 DGRYWTMWKLPMFGCSDAAQVLKELDEAVKAYPTAFVRIIGFDNVRQ 167
                T+WK PMFGC+DA+QVLKEL EA   YP +F+RIIGFDN+RQ
Sbjct: 80  -----TIWKHPMFGCTDASQVLKELQEAKTTYPNSFIRIIGFDNIRQ 121


>Glyma18g39900.1 
          Length = 131

 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 96/133 (72%), Gaps = 22/133 (16%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDIT------SIASNGG 54
           MASSM++S AVTT+N  S     MVAPFTGLKSMAGFPVRKTN DIT       I  +  
Sbjct: 1   MASSMMSSPAVTTVNRGS-----MVAPFTGLKSMAGFPVRKTNYDITYHKQHWKITMHQH 55

Query: 55  RVQCMQVWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETE---KGFVYR 111
            +Q ++VWP +G KKFETLSYLPPLT EQLLKE       GW+PCLEFE E   KGFVYR
Sbjct: 56  TMQ-IKVWPQIG-KKFETLSYLPPLTREQLLKE------DGWIPCLEFELESVPKGFVYR 107

Query: 112 ENHKSPGYYDGRY 124
           ENH+SPGYYDG Y
Sbjct: 108 ENHRSPGYYDGSY 120


>Glyma08g48060.1 
          Length = 89

 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 82/105 (78%), Gaps = 16/105 (15%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSM++S AVTT+N     + +MVAPFTGLKSMAGFPVRKTN DITSIASN GR     
Sbjct: 1   MASSMMSSPAVTTVN-----RGSMVAPFTGLKSMAGFPVRKTNYDITSIASNTGR----- 50

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETE 105
           VWPP+GKKKFETLSYLPPLT EQLLKE       GW+PCLEFE E
Sbjct: 51  VWPPIGKKKFETLSYLPPLTREQLLKE------DGWIPCLEFELE 89


>Glyma14g10170.1 
          Length = 135

 Score =  130 bits (328), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 79/105 (75%), Gaps = 16/105 (15%)

Query: 1   MASSMITSSAVTTINGASPAQANMVAPFTGLKSMAGFPVRKTNTDITSIASNGGRVQCMQ 60
           MASSM++S AVTT+N     + +MVAPF+GLKSMAGFPVRKT  DITSIASN GR     
Sbjct: 1   MASSMMSSPAVTTVN-----RGSMVAPFSGLKSMAGFPVRKTKYDITSIASNTGR----- 50

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETE 105
           VWP +GKKKFET SYLPPLT EQLLKE       GW+PCLEFE E
Sbjct: 51  VWPRIGKKKFETPSYLPPLTREQLLKE------DGWIPCLEFELE 89


>Glyma19g06420.1 
          Length = 123

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 66/127 (51%), Gaps = 23/127 (18%)

Query: 61  VWPPVGKKKFETLSYLPPLTTEQLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYY 120
           VW P+GKK FETLSYLP L   QL KEVEYLLR GW+PCLEFE E   V         Y+
Sbjct: 1   VWQPIGKK-FETLSYLPNLDDAQLAKEVEYLLRNGWIPCLEFELEFSLVL---FFVSTYF 56

Query: 121 DG--RYWTMWKLPMFGCSDAAQVLKELDE-----------------AVKAYPTAFVRIIG 161
           +    +  +  + +  CS  +  +   D                  A   YP AF+RIIG
Sbjct: 57  EEIIVFHAILMVDLSVCSTVSCTVSTTDHQDTMMDATRPCGSCLCLAKTTYPNAFIRIIG 116

Query: 162 FDNVRQV 168
           FDNVRQV
Sbjct: 117 FDNVRQV 123