Miyakogusa Predicted Gene

Lj1g3v3194570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3194570.1 tr|Q6ZDL1|Q6ZDL1_ORYSJ Oxygen evolving complex
protein-like OS=Oryza sativa subsp. japonica
GN=P0404,60.53,2e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.30182.1
         (139 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g10540.2                                                       175   2e-44
Glyma02g10540.1                                                       172   8e-44
Glyma18g52340.1                                                       162   7e-41

>Glyma02g10540.2 
          Length = 218

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 99/127 (77%), Gaps = 4/127 (3%)

Query: 4   PQKHGASRSPRREGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFLFSQNS 63
           PQKH  +RS RR+ ISF VKA  EPSAS     SQDR  RR+VIA+GTTAPLVFLF+Q+S
Sbjct: 32  PQKH-VTRSSRRDAISFIVKAVQEPSAS---LTSQDRQRRRQVIAVGTTAPLVFLFNQHS 87

Query: 64  SSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVWASSTGWRN 123
           +SFAAENKKGFLPV D+KDGY+F+YPFGWQEV IEGQDKVFKDVIEPLE+V  +      
Sbjct: 88  NSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLENVSVNVIPTGK 147

Query: 124 SDKKGFG 130
            D   FG
Sbjct: 148 QDITEFG 154


>Glyma02g10540.1 
          Length = 248

 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 99/127 (77%), Gaps = 4/127 (3%)

Query: 4   PQKHGASRSPRREGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFLFSQNS 63
           PQKH  +RS RR+ ISF VKA  EPSAS     SQDR  RR+VIA+GTTAPLVFLF+Q+S
Sbjct: 32  PQKH-VTRSSRRDAISFIVKAVQEPSAS---LTSQDRQRRRQVIAVGTTAPLVFLFNQHS 87

Query: 64  SSFAAENKKGFLPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVWASSTGWRN 123
           +SFAAENKKGFLPV D+KDGY+F+YPFGWQEV IEGQDKVFKDVIEPLE+V  +      
Sbjct: 88  NSFAAENKKGFLPVLDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLENVSVNVIPTGK 147

Query: 124 SDKKGFG 130
            D   FG
Sbjct: 148 QDITEFG 154


>Glyma18g52340.1 
          Length = 235

 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 95/122 (77%), Gaps = 3/122 (2%)

Query: 9   ASRSPRREGISFTVKAAHEPSASSAGFLSQDRPGRREVIAIGTTAPLVFLFSQNSSSFAA 68
           A+RS RR+ ISF VKAA EPSAS A   SQ R  RR+VIA GTTAPLVFLF+Q+S+S AA
Sbjct: 23  ATRSSRRDAISFIVKAAQEPSASLA---SQGRQRRRQVIAFGTTAPLVFLFNQHSNSCAA 79

Query: 69  ENKKGFLPVTDQKDGYTFIYPFGWQEVSIEGQDKVFKDVIEPLESVWASSTGWRNSDKKG 128
           ENKKGFLPV D+KDGY+F+YPFGWQEV IEGQDKVFKDVIEPLE+V  +       D   
Sbjct: 80  ENKKGFLPVLDKKDGYSFLYPFGWQEVVIEGQDKVFKDVIEPLENVSVNVIPTGKQDITE 139

Query: 129 FG 130
           FG
Sbjct: 140 FG 141