Miyakogusa Predicted Gene

Lj1g3v3101580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3101580.2 tr|B9N1W4|B9N1W4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_784144 PE=4
SV=1,60.26,0.0000000000001,seg,NULL,CUFF.30042.2
         (140 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g28260.1                                                       139   1e-33
Glyma18g51270.1                                                       138   2e-33
Glyma17g09030.1                                                        49   2e-06

>Glyma08g28260.1 
          Length = 128

 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 83/116 (71%), Gaps = 11/116 (9%)

Query: 23  MDSFKQIWG-AEGCSSSESGWTMYIASPMQEDDGGCSNENDGGYHE--IYGENRMKKKGA 79
           MDSFKQIWG AEGCSSSESGWTMYIASPMQEDD GCSNEND GYH+  IYGENR KK+GA
Sbjct: 1   MDSFKQIWGSAEGCSSSESGWTMYIASPMQEDDAGCSNEND-GYHDNNIYGENRRKKQGA 59

Query: 80  RXXXXXXXXXXXXXXXXGPV-------RGQTSHGTAVSKKEKQDHGSKCSSKKSAN 128
           +                GPV         Q+SHGTA SKK+KQDHGSK SSKK+AN
Sbjct: 60  QVDEEESDDSMASDASSGPVHYHHAYTHRQSSHGTAASKKDKQDHGSKFSSKKNAN 115


>Glyma18g51270.1 
          Length = 127

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/114 (64%), Positives = 79/114 (69%), Gaps = 8/114 (7%)

Query: 23  MDSFKQIWG-AEGCSSSESGWTMYIASPMQEDDGGCSNENDGGYHEIYGENRMKKKGARX 81
           MDSFKQIWG AEGCSSSESGWTMYIASPMQED  GCSNENDG +  IY ENR KK+GA+ 
Sbjct: 1   MDSFKQIWGSAEGCSSSESGWTMYIASPMQEDAAGCSNENDGYHDNIYAENRRKKQGAKV 60

Query: 82  XXXXXXXXXXXXXXXGPV-------RGQTSHGTAVSKKEKQDHGSKCSSKKSAN 128
                          GP+         Q SHGTA SKK+KQDHGSKCSSKK+AN
Sbjct: 61  DEEESDDSMASDASSGPIHYHHAYAHSQGSHGTAASKKDKQDHGSKCSSKKNAN 114


>Glyma17g09030.1 
          Length = 140

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 28/35 (80%), Gaps = 2/35 (5%)

Query: 28 QIWGAEGCSSSESGWTMYIASPMQEDDGGCSNEND 62
          + +GAEGC SSESGWTMYI SP+  DD G S++ND
Sbjct: 2  EPFGAEGCHSSESGWTMYIGSPI--DDAGHSSDND 34