Miyakogusa Predicted Gene

Lj1g3v3006710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3006710.1 Non Chatacterized Hit- tr|A5B0X8|A5B0X8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.07,1e-18,C2H2 and C2HC zinc fingers,NULL;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; U1-like zinc finger,Zinc
fing,CUFF.29852.1
         (368 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g49990.1                                                       159   4e-39
Glyma08g26510.1                                                       150   3e-36
Glyma08g26500.1                                                        53   6e-07
Glyma18g49980.1                                                        51   2e-06

>Glyma18g49990.1 
          Length = 296

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/223 (47%), Positives = 130/223 (58%), Gaps = 39/223 (17%)

Query: 162 VDSDAPLNSNTEPATTCGTGITIPSSNGSEQLAIAN--------TTTQPHGNGECKKDE- 212
           V  +A     T+P T    GI++P  NGSEQLA+AN        TTTQPH NG  KK++ 
Sbjct: 95  VAREAVRQFGTDP-TLYAPGISLPP-NGSEQLAMANPSSLWWTNTTTQPHVNGTPKKNQK 152

Query: 213 -IEIVQSAYNCEVCKIDCRTKQNLDQHXXXXXXXXXXXXXTQDHPSGSSNPAIELEKL-- 269
             ++VQ A+ CEVCKI+C  K+ LDQH                           +EKL  
Sbjct: 153 KTKVVQPAF-CEVCKIECTGKEVLDQHKLGKKHKK------------------NVEKLRE 193

Query: 270 ----TQVHPSGSSSPAIGPQQEQNDEGKSIGGHKKKRKN-ETPEDLERKKKKLIECGTVA 324
               TQV PSGSS P IGPQ   +D+GKSI G+K KRK  ET EDLE+KK K++  G  A
Sbjct: 194 SLTPTQVQPSGSSKPLIGPQLP-DDKGKSISGNKSKRKKVETAEDLEKKKMKVLMGGAAA 252

Query: 325 DAVRTCDICNVVCNNESVYKYHLAGKKHVAMVKKASDLGQGNG 367
            AV+ C ICNVVCN+E+VY YHLAG+KH AM KKAS   Q N 
Sbjct: 253 SAVKICAICNVVCNSETVYNYHLAGQKHAAMQKKASGHTQSNA 295


>Glyma08g26510.1 
          Length = 302

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 128/224 (57%), Gaps = 42/224 (18%)

Query: 165 DAPLNSNTEPATTCGTGITIPSSNGSEQLAIAN---------TTTQPHGNG----ECKKD 211
           DA     T+P T    GI++PS NGSEQLA+AN         TTT PH NG      KK 
Sbjct: 101 DAVRQFGTDP-TLYAPGISLPS-NGSEQLAMANPSSSLWWTNTTTLPHVNGILKKNQKKA 158

Query: 212 EIEIVQSAYNCEVCKIDCRTKQNLDQHXXXXXXXXXXXXXTQDHPSGSSNPAIELEKL-- 269
           + +IVQ A+ CEVCKI+C +K  LDQH                           +EKL  
Sbjct: 159 KTKIVQPAF-CEVCKIECTSKDVLDQHKLGKKHKK------------------NVEKLRE 199

Query: 270 ----TQVHPSGSSSPAIGPQQEQNDEGKSIGGHKKKRKN-ETPEDLERKKKKLIECGTVA 324
               TQV PS SS P IGPQ   +D+ KS  G+K KRK  ET EDLE+KK K++E G  A
Sbjct: 200 SLTPTQVQPSVSSKPLIGPQLP-DDKSKSTSGNKSKRKKVETAEDLEKKKMKVLEGGAAA 258

Query: 325 DAVRTCDICNVVCNNESVYKYHLAGKKHVAMVKKASDLGQGNGS 368
            AV+ C ICNVVCN+E+VY YHLAG+KH AM+KKAS   Q + S
Sbjct: 259 SAVKICAICNVVCNSETVYNYHLAGQKHAAMLKKASGHMQSSAS 302


>Glyma08g26500.1 
          Length = 407

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 25  TISTLLHRVEALESSLNLHTHQPLRHAAARVIQ 57
           T+S+LLHR+E LESSLN +TH  LRHAAAR+IQ
Sbjct: 103 TMSSLLHRIETLESSLNHYTHHSLRHAAARLIQ 135


>Glyma18g49980.1 
          Length = 452

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 25  TISTLLHRVEALESSLNLHTHQPLRHAAARVIQ 57
           TIS+LL R+E+LESS N +TH  LRHAAARVIQ
Sbjct: 105 TISSLLDRIESLESSFNHYTHHSLRHAAARVIQ 137