Miyakogusa Predicted Gene
- Lj1g3v2982420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2982420.1 Non Chatacterized Hit- tr|C5Z6W3|C5Z6W3_SORBI
Putative uncharacterized protein Sb10g007530
OS=Sorghu,24.94,6e-18,seg,NULL; RNI-like,NULL; F-box domain,F-box
domain, cyclin-like; no description,NULL,CUFF.29809.1
(497 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g40890.1 70 8e-12
Glyma08g20850.1 68 2e-11
Glyma10g27420.1 59 1e-08
Glyma10g27200.1 55 2e-07
Glyma02g07170.1 54 4e-07
Glyma10g27110.1 52 1e-06
Glyma09g26190.1 52 2e-06
Glyma09g26180.1 51 2e-06
Glyma09g26200.1 51 2e-06
Glyma09g26150.1 51 2e-06
Glyma09g26240.1 51 3e-06
Glyma10g27170.1 51 3e-06
Glyma09g25930.1 50 5e-06
Glyma09g25840.1 50 5e-06
Glyma08g20500.1 50 8e-06
>Glyma08g40890.1
Length = 282
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 24/219 (10%)
Query: 24 KRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELL 83
K DYIS+LP+ I+ YI S + +KD + T LS +W N+ +L D N+ E L
Sbjct: 1 KEDYISKLPNSIICYILSYLKVKDAVTTSVLSSKWRNISCNPSNLILDEDNMLIKREHSL 60
Query: 84 DKGYL--AIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIM-IDSFMVKFN-NLNHRH 139
L ++ + E+ R F+ VN ++ + + + ID V F N
Sbjct: 61 TYVLLHQSVVQRLEFKRDRTL-----AFVSNVNMYLSHVEEVQKIDKLKVCFTFRHNEYG 115
Query: 140 SKNIDEWIKFAISRGVGRIDLLLYQEPGHYK------GTRYTFPFGL--SFECKS---SR 188
S ++D WI+FA+ + V IDL L +E H++ Y FP + ++E +S S
Sbjct: 116 STDLDRWIRFAVEKNVEEIDLCLLEENHHHQINASPNDGYYVFPCEVVGNYEGESGSKSF 175
Query: 189 LKHMHLVGCKLVCPPSNFDIFPFTNLKSLVLERSRVDVK 227
LK + L C V P F+ L + +E +VD+K
Sbjct: 176 LKSLRLAHC--VLAPHMLHNLGFSTLTT--MELFKVDLK 210
>Glyma08g20850.1
Length = 552
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 18/147 (12%)
Query: 22 KGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEE 81
K + I LPD +L I S + KD T LSK+W+ +W L+F ++ E
Sbjct: 6 KMEEGQIENLPDIVLHDILSRLPEKDAARTSVLSKKWAEIWSTFPILSF-------TDTE 58
Query: 82 LLDKGYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNF--KGIMIDSFMVKFNNLNHRH 139
+++K + +SRKD K +FI RVN+ F KG++I F + N +
Sbjct: 59 IIEK--------FPHSRKDDLVGGKKKFINRVNETFLRFRNKGLVIKEFKLSINCFDLED 110
Query: 140 -SKNIDEWIKFAISRGVGRIDLLLYQE 165
SK+ID W+K A GVG ++L L+ E
Sbjct: 111 LSKDIDHWMKLASESGVGVLELCLHDE 137
>Glyma10g27420.1
Length = 311
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 33/189 (17%)
Query: 11 LTVRCVLHSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNF 70
LT ++ + +RD +SELPD +L +I + + KD + TC LSKRW +LW L+F
Sbjct: 11 LTTEPMIQRTTEEERDRLSELPDFVLLHIMNFIDTKDALRTCILSKRWKDLWKHLTTLSF 70
Query: 71 DVHNVFGSEEELLDKGYLAIEKVYEYSRKDISDV--CKDEFIKRVNQFVKNFKGIMIDSF 128
D E +++ K +S V C+D I +N + F+ I
Sbjct: 71 DQSTSLFDERRVVNFN------------KFVSQVLSCRDGSILLINIRLVIFESI----- 113
Query: 129 MVKFNNLNHRHSKNIDEWIKFAISRGVGRIDLLLYQEPGHYKGTRYTFPFGLSFECKSSR 188
S+ ++ +K+A+ V R+ + + P Y G T+ + F C+S
Sbjct: 114 ----------GSQLLNRIMKYAVLHNVQRLTMNI---PFFY-GKISTYLDPIIFSCQSLT 159
Query: 189 LKHMHLVGC 197
+H + C
Sbjct: 160 YLELHNISC 168
>Glyma10g27200.1
Length = 425
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 34/189 (17%)
Query: 11 LTVRCVLHSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNF 70
LT + + +RD +SELPD +L +I + + KD + TC LSKRW +LW L+F
Sbjct: 11 LTTEPKIQRTSEEERDRLSELPDFVLLHIMNFIYTKDALRTCILSKRWKDLWKHLTTLSF 70
Query: 71 DVHNVFGSEEELLDKGYLAIEKVYEYSRKDISDV--CKDEFIKRVNQFVKNFKGIMIDSF 128
++F +V ++ K +S V C+D I +N + F+ I
Sbjct: 71 YQSSLFNE------------RRVVNFN-KFVSQVLSCRDGSISLINVRLDIFESI----- 112
Query: 129 MVKFNNLNHRHSKNIDEWIKFAISRGVGRIDLLLYQEPGHYKGTRYTFPFGLSFECKSSR 188
S+ ++ +K+A+ V ++ + + P +Y G T+ + F C+S
Sbjct: 113 ----------GSQLLNRIMKYAVLHNVQQLTMYI---PFYY-GKISTYLDPIIFSCQSLT 158
Query: 189 LKHMHLVGC 197
+H + C
Sbjct: 159 YLELHNISC 167
>Glyma02g07170.1
Length = 267
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%)
Query: 25 RDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNF 70
RD ISELPDCIL +I S + KD + TC LSKRW +L DL F
Sbjct: 1 RDRISELPDCILMHIMSFLDTKDAVQTCILSKRWKDLCKCLTDLTF 46
>Glyma10g27110.1
Length = 265
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%)
Query: 24 KRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELL 83
+RD +SELPD +L +I + + KD + TC LSKRW +LW +FD E +L
Sbjct: 24 ERDRLSELPDFVLLHIMNFIDTKDALRTCILSKRWKDLWKHLTTFSFDQSTSLFDERRVL 83
>Glyma09g26190.1
Length = 286
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 17 LHSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDV 72
+ SD + +RD +SELPDC++ +I + K + TC LSKRW +LW L F+
Sbjct: 22 IRSDREDERDRLSELPDCVVLHIMEFMDTKYAVQTCVLSKRWKDLWKRLTYLGFNT 77
>Glyma09g26180.1
Length = 387
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 HSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDV 72
SD + +RD +SELPDC++ +I + K + TC LSKRW +LW L F+
Sbjct: 23 RSDREEERDRLSELPDCVVLHIMEFMDTKYAVQTCVLSKRWKDLWKRLTYLGFNT 77
>Glyma09g26200.1
Length = 323
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 HSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDV 72
SD + +RD +SELPDC++ +I + K + TC LSKRW +LW L F+
Sbjct: 23 RSDREEERDRLSELPDCVVLHIMEFMDTKYAVQTCVLSKRWKDLWKRLTYLGFNT 77
>Glyma09g26150.1
Length = 282
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 HSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDV 72
SD + +RD +SELPDC++ +I + K + TC LSKRW +LW L F+
Sbjct: 23 RSDREEERDRLSELPDCVVLHIMEFMDTKYAVQTCVLSKRWKDLWKRLTYLGFNT 77
>Glyma09g26240.1
Length = 324
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 HSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDV 72
SD + +RD +SELPDC++ +I + K + TC LSKRW +LW L F+
Sbjct: 12 RSDREEERDRLSELPDCVVLHIMEFMDTKYAVQTCVLSKRWKDLWKRLTYLGFNT 66
>Glyma10g27170.1
Length = 280
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 11 LTVRCVLHSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNF 70
LT + + +RD +SELPD +L +I + + KD + TC LSKRW +LW L+F
Sbjct: 11 LTTEPKIQRTSEEERDRLSELPDFVLLHIMNFIDTKDALRTCILSKRWKDLWKHLTTLSF 70
>Glyma09g25930.1
Length = 296
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 22 KGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFD 71
K K D ISELPD +L +I + K + TC LSKRW +LW +L+FD
Sbjct: 10 KDKSDRISELPDSVLLHIIEFMDTKSGVQTCVLSKRWKDLWKSLTNLSFD 59
>Glyma09g25840.1
Length = 261
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 22 KGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEE 81
K RD ISE+PD IL ++ + + ++ + TC LSKRW+NLW L F+ + FGS +
Sbjct: 9 KDDRDKISEMPDNILLHMMNFMDTREAVQTCVLSKRWNNLWKRLTSLLFN-SSKFGSVVK 67
Query: 82 LLDKGYL 88
+++ Y+
Sbjct: 68 IINFLYM 74
>Glyma08g20500.1
Length = 426
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 20 DVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNF 70
+++ D +S++PDCI+ +I S + KD + TC LSKRW LW LNF
Sbjct: 50 EMEESEDRLSDMPDCIIHHILSFMETKDAIQTCVLSKRWRYLWASVPCLNF 100