Miyakogusa Predicted Gene

Lj1g3v2975890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2975890.1 tr|Q2HSY9|Q2HSY9_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MtrDRAFT_AC150889g27v2 PE=4
SV=2,36.19,2e-17,seg,NULL; F-box domain,F-box domain, cyclin-like; no
description,NULL; SUBFAMILY NOT NAMED,NULL; FAM,CUFF.29773.1
         (274 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g40890.1                                                        54   2e-07
Glyma10g27110.1                                                        51   1e-06
Glyma10g27420.1                                                        50   2e-06

>Glyma08g40890.1 
          Length = 282

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 9/144 (6%)

Query: 58  KMDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRDLKFDQLNVLGSDEELR 117
           K DYIS+LP+ I+  ILS L +KD + T +LS +  N+     +L  D+ N+L     ++
Sbjct: 1   KEDYISKLPNSIICYILSYLKVKDAVTTSVLSSKWRNISCNPSNLILDEDNML-----IK 55

Query: 118 RAGYYVDVLKNGNQCEHLHLDVLRD-EFVRRVDQFVKNFKG-DIIDSIVVQFNLNLAE-- 173
           R      VL + +  + L     R   FV  V+ ++ + +    ID + V F     E  
Sbjct: 56  REHSLTYVLLHQSVVQRLEFKRDRTLAFVSNVNMYLSHVEEVQKIDKLKVCFTFRHNEYG 115

Query: 174 SNIIDQWIRFAISKGAGRIDVLFL 197
           S  +D+WIRFA+ K    ID+  L
Sbjct: 116 STDLDRWIRFAVEKNVEEIDLCLL 139


>Glyma10g27110.1 
          Length = 265

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 42  KFQFHHAPSPADTNAEKMDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRD 101
           K +    P+   T+ E+ D +SELPD +L  I++ +  KD L TC+LSKR  +LW     
Sbjct: 8   KGKLTTEPNIQRTSEEERDRLSELPDFVLLHIMNFIDTKDALRTCILSKRWKDLWKHLTT 67

Query: 102 LKFDQ 106
             FDQ
Sbjct: 68  FSFDQ 72


>Glyma10g27420.1 
          Length = 311

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query: 42  KFQFHHAPSPADTNAEKMDYISELPDCILADILSMLSMKDMLNTCLLSKRLCNLWHLRRD 101
           K +    P    T  E+ D +SELPD +L  I++ +  KD L TC+LSKR  +LW     
Sbjct: 8   KGKLTTEPMIQRTTEEERDRLSELPDFVLLHIMNFIDTKDALRTCILSKRWKDLWKHLTT 67

Query: 102 LKFDQ 106
           L FDQ
Sbjct: 68  LSFDQ 72