Miyakogusa Predicted Gene
- Lj1g3v2873800.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2873800.1 tr|G7KTQ9|G7KTQ9_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_7g110080 PE=4
S,31.35,5e-19,REPLICATION FACTOR A 1, RFA1,NULL; Nucleic acid-binding
proteins,Nucleic acid-binding, OB-fold-like;,CUFF.29627.1
(255 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma15g19090.1 73 2e-13
Glyma18g33200.1 73 3e-13
Glyma05g00370.1 62 6e-10
Glyma05g00370.2 62 7e-10
Glyma09g34670.1 62 9e-10
Glyma11g27090.1 48 8e-06
>Glyma15g19090.1
Length = 637
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 17/232 (7%)
Query: 21 WRIKVRVVRMWEMCPISEP---GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGN 77
W IK RV ++ + GK F+ L+D++G I T +++ + + I G
Sbjct: 204 WAIKARVTAKGDLRRYNNARGDGKVFSFD--LLDSDGGEIRVTCFNAVVDRFYNVIEVGK 261
Query: 78 IYKITYFSVVPNLGVYKAAKHEFKIIFNSRT--KIVPEESDLIPLYGFDFMNSAEIAHTN 135
+Y I+ S+ P + K+E++I+ S + ++ P+E IP F F ++I + +
Sbjct: 262 VYMISKGSLKPAQKNFNHLKNEWEILLESSSMVELCPDEDGSIPRQQFSFRPISDIENVD 321
Query: 136 GESENLIDVIGLVTAVSREKQYTK--GANITRMIELQLIDDRG-IVQCTFFVSYVDVFTH 192
S ++DVIG+VT+V+ + G R I L L D G V+ T + + +
Sbjct: 322 NNS--ILDVIGVVTSVNPSVPILRKNGMETQRRI-LSLKDSSGSSVELTLWGEFCNREGQ 378
Query: 193 HVQE--DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFR 242
+Q+ D P++ VK K+ F G + + T++ NP+ PE + R
Sbjct: 379 QLQDMVDAGFFPILAVKTGKVNDFSGKSI--GSISTTQLFINPDFPEAHSLR 428
>Glyma18g33200.1
Length = 126
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 6/124 (4%)
Query: 25 VRVVRMWEMCPISEPGK------PFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNI 78
VRVV +W + +S + P +++MVL+D++G R+ ++ ++ I K + EG
Sbjct: 2 VRVVHLWMVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGKW 61
Query: 79 YKITYFSVVPNLGVYKAAKHEFKIIFNSRTKIVPEESDLIPLYGFDFMNSAEIAHTNGES 138
Y I +F V N G+Y+ H++KI+F TK+ ++ IP +DF+ +I ++
Sbjct: 62 YSIQFFGVAENGGIYRTTHHKYKIVFQYSTKVALVDNASIPNSMYDFVPIRDIVCGGYDT 121
Query: 139 ENLI 142
+ L+
Sbjct: 122 DYLV 125
>Glyma05g00370.1
Length = 708
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 21 WRIKVRVVRMWEMCPISEP-GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNIY 79
W IKV V M G + L D +G +I+AT+ + RK F + V G +Y
Sbjct: 188 WTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFFDKFVLGKVY 247
Query: 80 KITYFSVVPNLGVYKAAKHEFKIIFNSRTKI--VPEESDLIPLYGFDFMNSAEIAHTNGE 137
I+ ++ +K ++++++ N +++ V E+ +P F+F+ ++ +
Sbjct: 248 YISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQLGPHVNK 307
Query: 138 SENLIDVIGLVTAVSRE---KQYTKGANITRMIELQLIDD-RGIVQCTFFVSYVDVFTHH 193
SE L+DVIG+V VS ++ + +I + ++ + DD + V + +
Sbjct: 308 SE-LVDVIGVVKNVSSTMSIRRKSDNESIPKR-DITIADDTKKTVVVSLWNELATTTGEE 365
Query: 194 VQEDRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRN 243
+ + PVV +K K+ F+G V + + + +L NP+IPE R+
Sbjct: 366 LLDIVDKSPVVAIKSLKVGDFQG--VSLSTIGRSVVLVNPDIPEAKNLRS 413
>Glyma05g00370.2
Length = 620
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 21 WRIKVRVVRMWEMCPISEP-GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGNIY 79
W IKV V M G + L D +G +I+AT+ + RK F + V G +Y
Sbjct: 188 WTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKFFDKFVLGKVY 247
Query: 80 KITYFSVVPNLGVYKAAKHEFKIIFNSRTKI--VPEESDLIPLYGFDFMNSAEIAHTNGE 137
I+ ++ +K ++++++ N +++ V E+ +P F+F+ ++ +
Sbjct: 248 YISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFVQIDQLGPHVNK 307
Query: 138 SENLIDVIGLVTAVSRE---KQYTKGANITRMIELQLIDD-RGIVQCTFFVSYVDVFTHH 193
SE L+DVIG+V VS ++ + +I + ++ + DD + V + +
Sbjct: 308 SE-LVDVIGVVKNVSSTMSIRRKSDNESIPKR-DITIADDTKKTVVVSLWNELATTTGEE 365
Query: 194 VQEDRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFRN 243
+ + PVV +K K+ F+G V + + + +L NP+IPE R+
Sbjct: 366 LLDIVDKSPVVAIKSLKVGDFQG--VSLSTIGRSVVLVNPDIPEAKNLRS 413
>Glyma09g34670.1
Length = 786
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 15/231 (6%)
Query: 21 WRIKVRVVRMWEMCPISEP---GKPFAVQMVLIDAEGQRIEATIIKSLIRKLFGEIVEGN 77
W IK RV E+ + GK F+ L+D++G I AT ++ + + I G
Sbjct: 263 WTIKARVTFKGELRHYTNARGDGKVFSFD--LLDSDGGEIRATCFNAVADQFYNVIEAGK 320
Query: 78 IYKITYFSVVPNLGVYKAAKHEFKIIFNSRTKIVP--EESDLIPLYGFDFMNSAEIAHTN 135
+Y I+ S+ P + +++ ++ + + I P +++D IP F++ +EI
Sbjct: 321 VYLISRGSIKPAQKNFNHLRNDQELTLDVASIIQPCLDDNDSIPSQTFNYRPISEIESL- 379
Query: 136 GESENLIDVIGLVTAVSREKQ-YTKGANITRMIELQLIDDRG-IVQCTFFVSYVDVFTHH 193
E+ +++DVIG+VT++S K + LQL D G V+ T + ++ V
Sbjct: 380 -ENNSIVDVIGVVTSISPTASIMRKNGTEVQKRTLQLKDMSGRSVELTLWGNFCIVEGQR 438
Query: 194 VQE--DRQAMPVVVVKFAKIKTFKGDFVLQNVMHATRILWNPEIPEVLAFR 242
+Q D PV+ K ++ F G V + +++ P+ PE +
Sbjct: 439 LQTICDAGEFPVLATKAVRVNDFNGKSV--GTIATSQLYVEPDFPEACTLK 487
>Glyma11g27090.1
Length = 206
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 18 RDTWRIKVRVVRMWEMCPISEPGKPFA-VQMVLIDAEGQRIEATIIKSLIRKLFGEIVE- 75
++T +I VRV+ MW + P P + V+++L+D +G +I A + +++ +L I +
Sbjct: 11 KETCKIIVRVINMWTI-----PRSPKSIVELILVDKKGDKILAQM-RNVDVQLDNVIFDV 64
Query: 76 GNIYKITYFSVVPNLGVYKAAKHEFKIIFNSRTKIV 111
G+ Y I F V N G YKA +H FKI F TK++
Sbjct: 65 GHTYVIKNFEVEKNSGHYKATRHGFKINFVKTTKML 100