Miyakogusa Predicted Gene
- Lj1g3v2612700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2612700.1 Non Chatacterized Hit- tr|Q8VWW4|Q8VWW4_ORYSA
Putative uncharacterized protein (Fragment) OS=Oryza
s,65.67,1e-17,seg,NULL; F-box domain,F-box domain, cyclin-like; no
description,NULL,CUFF.29303.1
(366 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g40070.2 525 e-149
Glyma09g40070.1 525 e-149
Glyma18g46130.1 517 e-147
Glyma09g26950.3 351 6e-97
Glyma09g26950.2 351 6e-97
Glyma09g26950.1 351 6e-97
Glyma16g32240.1 100 3e-21
Glyma16g32240.2 82 8e-16
>Glyma09g40070.2
Length = 363
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/346 (74%), Positives = 284/346 (82%), Gaps = 4/346 (1%)
Query: 3 MMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQ 62
MME KD LS LDSD SLKI MCLDD DLVRV+CVSRSWRH+VI N LCKQLCLR+FPQ
Sbjct: 1 MMEYCKDVLSCLDSDTSLKIFMCLDDLADLVRVTCVSRSWRHFVIANGLCKQLCLRMFPQ 60
Query: 63 LSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIV 122
LSRV VVE NQ+G +E EVGSS SMEWL+L R+HRVYAYL R+ SSV+MNCIAKT+
Sbjct: 61 LSRVAFVVELNQNGAKEHAEVGSSYSMEWLSLLREHRVYAYLGRALMSSVAMNCIAKTVG 120
Query: 123 ASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQ 182
ASSTDNFPQESIDNTLEP D+I GRY YWSS+G SNPNVPETLTYEL SQICV+TEINIQ
Sbjct: 121 ASSTDNFPQESIDNTLEPRDYINGRYCYWSSDGQSNPNVPETLTYELVSQICVITEINIQ 180
Query: 183 PFQAYFQMGGPIYSAKSVRFKMGHINASLDASADEKIVWTYTSPEFPMTQENELQNFKLP 242
PFQA FQ G PIYSAKSVRFKMGH ASLD + DE VWTY SPEFPM+QEN LQ FKLP
Sbjct: 181 PFQADFQRGSPIYSAKSVRFKMGHPKASLDVADDEMFVWTYNSPEFPMSQENRLQKFKLP 240
Query: 243 EPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEPSGMFVLKC 302
EPVLCIGGILQ+ELLGRVQRQEMDGLLYIC+SHVQ +GS LSP F+VDIL+PSGMFVLK
Sbjct: 241 EPVLCIGGILQIELLGRVQRQEMDGLLYICVSHVQVLGSSLSPPFNVDILQPSGMFVLKR 300
Query: 303 DR--NYQPPATSEEESGANSTDYMQRGLRDFQQIVTILRGHVIGVV 346
D+ N+Q TS ES + QR LRD+Q IVTI RG +G+V
Sbjct: 301 DQLANHQSVVTSGNESQEILAE--QRELRDYQHIVTIFRGQALGIV 344
>Glyma09g40070.1
Length = 363
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/346 (74%), Positives = 284/346 (82%), Gaps = 4/346 (1%)
Query: 3 MMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQ 62
MME KD LS LDSD SLKI MCLDD DLVRV+CVSRSWRH+VI N LCKQLCLR+FPQ
Sbjct: 1 MMEYCKDVLSCLDSDTSLKIFMCLDDLADLVRVTCVSRSWRHFVIANGLCKQLCLRMFPQ 60
Query: 63 LSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIV 122
LSRV VVE NQ+G +E EVGSS SMEWL+L R+HRVYAYL R+ SSV+MNCIAKT+
Sbjct: 61 LSRVAFVVELNQNGAKEHAEVGSSYSMEWLSLLREHRVYAYLGRALMSSVAMNCIAKTVG 120
Query: 123 ASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQ 182
ASSTDNFPQESIDNTLEP D+I GRY YWSS+G SNPNVPETLTYEL SQICV+TEINIQ
Sbjct: 121 ASSTDNFPQESIDNTLEPRDYINGRYCYWSSDGQSNPNVPETLTYELVSQICVITEINIQ 180
Query: 183 PFQAYFQMGGPIYSAKSVRFKMGHINASLDASADEKIVWTYTSPEFPMTQENELQNFKLP 242
PFQA FQ G PIYSAKSVRFKMGH ASLD + DE VWTY SPEFPM+QEN LQ FKLP
Sbjct: 181 PFQADFQRGSPIYSAKSVRFKMGHPKASLDVADDEMFVWTYNSPEFPMSQENRLQKFKLP 240
Query: 243 EPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEPSGMFVLKC 302
EPVLCIGGILQ+ELLGRVQRQEMDGLLYIC+SHVQ +GS LSP F+VDIL+PSGMFVLK
Sbjct: 241 EPVLCIGGILQIELLGRVQRQEMDGLLYICVSHVQVLGSSLSPPFNVDILQPSGMFVLKR 300
Query: 303 DR--NYQPPATSEEESGANSTDYMQRGLRDFQQIVTILRGHVIGVV 346
D+ N+Q TS ES + QR LRD+Q IVTI RG +G+V
Sbjct: 301 DQLANHQSVVTSGNESQEILAE--QRELRDYQHIVTIFRGQALGIV 344
>Glyma18g46130.1
Length = 364
Score = 517 bits (1332), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/345 (73%), Positives = 283/345 (82%), Gaps = 4/345 (1%)
Query: 3 MMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQ 62
MME KD LS+LDSD S+KILM LDD DLVR +CVSRSWR VI N LCKQLCLR+FPQ
Sbjct: 1 MMEYCKDVLSYLDSDTSIKILMSLDDLADLVRATCVSRSWRDIVIANGLCKQLCLRMFPQ 60
Query: 63 LSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIV 122
LSRV VVE NQ+G +E EVGSS SMEWL+L R+HRV+AYL R+ SSV+MNCIAKT+
Sbjct: 61 LSRVAFVVELNQNGAKEHAEVGSSYSMEWLSLLREHRVFAYLGRALMSSVAMNCIAKTVG 120
Query: 123 ASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQ 182
ASSTDNFPQESIDNTLEP DHI GRY YWSSNG SNPNVPETLTYEL S ICV+TEINIQ
Sbjct: 121 ASSTDNFPQESIDNTLEPRDHINGRYYYWSSNGQSNPNVPETLTYELVSPICVITEINIQ 180
Query: 183 PFQAYFQMGGPIYSAKSVRFKMGHINASLDASADEKIVWTYTSPEFPMTQENELQNFKLP 242
PFQA FQ+G PIYSAKSVRFKMGH ASLDA+ DE VWTYTSPEFPM++EN LQ FKLP
Sbjct: 181 PFQADFQIGSPIYSAKSVRFKMGHPKASLDATDDEMFVWTYTSPEFPMSKENRLQKFKLP 240
Query: 243 EPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEPSGMFVLKC 302
EPVLCIGG LQ+ELLGR+QRQEMDGLLYIC+SHVQ +G LSP F+VDIL+PSGMFVLK
Sbjct: 241 EPVLCIGGFLQIELLGRIQRQEMDGLLYICVSHVQVLGGSLSPPFNVDILQPSGMFVLKR 300
Query: 303 DR--NYQPPATSEEESGANSTDYMQRGLRDFQQIVTILRGHVIGV 345
D+ ++QP TS ES S + QR +RDFQ IVTIL G +G+
Sbjct: 301 DQLADHQPVVTSGNESQEISAE--QREVRDFQHIVTILSGQALGI 343
>Glyma09g26950.3
Length = 374
Score = 351 bits (901), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 237/362 (65%), Gaps = 34/362 (9%)
Query: 1 MSMMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIF 60
MS ++ + DF+ L DMS+KIL LDDP DL+RVS VS SW +VI LCKQLCL++F
Sbjct: 1 MSEVKNKVDFIQLLGPDMSIKILTHLDDPCDLIRVSAVSSSWHRFVIEQGLCKQLCLKMF 60
Query: 61 PQLSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKT 120
P++S V +VE + +GS + W +L+R HRVYA+LA + + NCI+K+
Sbjct: 61 PEISGVAHIVELDNIIEPLINTLGSY--VNWESLKRIHRVYAFLASGL-TPMRKNCISKS 117
Query: 121 IVASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEIN 180
I ASSTDN+P+ESI +TLEP D R SYWSS G S+P+VPETL Y+LAS++C+VTEI
Sbjct: 118 ISASSTDNYPEESILHTLEPGDRTQYRASYWSSKGESHPSVPETLVYKLASKLCLVTEIY 177
Query: 181 IQPFQAYFQMGGPIYSAKSVRFKMGHIN------------ASLDASADEKIVWTYTSPEF 228
+ PFQAYFQ G PIYSAK+VRF+MGH A+ D D + +WTYTSPEF
Sbjct: 178 VHPFQAYFQHGFPIYSAKAVRFRMGHPRHPMELESAVDKMATNDVLGDNQFIWTYTSPEF 237
Query: 229 PMTQENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFS 288
PM QEN LQ FKLPEPVLCIGG+L VELLGRVQ+QEMD L YICISHVQA+G +SP F
Sbjct: 238 PMFQENRLQKFKLPEPVLCIGGVLLVELLGRVQKQEMDELFYICISHVQAMGRSISPEFD 297
Query: 289 VDILEPSGMFVLKCDRNYQP---------------PATSEEESGANSTDYMQRGLRDFQQ 333
V I PSG KC Y P +++ +++ MQRG+R ++Q
Sbjct: 298 VKIHHPSG----KCTLKYCPQIDCYVSSSTSSQRSDSSNPSRLRTITSNIMQRGVRRWEQ 353
Query: 334 IV 335
+
Sbjct: 354 FL 355
>Glyma09g26950.2
Length = 374
Score = 351 bits (901), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 237/362 (65%), Gaps = 34/362 (9%)
Query: 1 MSMMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIF 60
MS ++ + DF+ L DMS+KIL LDDP DL+RVS VS SW +VI LCKQLCL++F
Sbjct: 1 MSEVKNKVDFIQLLGPDMSIKILTHLDDPCDLIRVSAVSSSWHRFVIEQGLCKQLCLKMF 60
Query: 61 PQLSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKT 120
P++S V +VE + +GS + W +L+R HRVYA+LA + + NCI+K+
Sbjct: 61 PEISGVAHIVELDNIIEPLINTLGSY--VNWESLKRIHRVYAFLASGL-TPMRKNCISKS 117
Query: 121 IVASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEIN 180
I ASSTDN+P+ESI +TLEP D R SYWSS G S+P+VPETL Y+LAS++C+VTEI
Sbjct: 118 ISASSTDNYPEESILHTLEPGDRTQYRASYWSSKGESHPSVPETLVYKLASKLCLVTEIY 177
Query: 181 IQPFQAYFQMGGPIYSAKSVRFKMGHIN------------ASLDASADEKIVWTYTSPEF 228
+ PFQAYFQ G PIYSAK+VRF+MGH A+ D D + +WTYTSPEF
Sbjct: 178 VHPFQAYFQHGFPIYSAKAVRFRMGHPRHPMELESAVDKMATNDVLGDNQFIWTYTSPEF 237
Query: 229 PMTQENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFS 288
PM QEN LQ FKLPEPVLCIGG+L VELLGRVQ+QEMD L YICISHVQA+G +SP F
Sbjct: 238 PMFQENRLQKFKLPEPVLCIGGVLLVELLGRVQKQEMDELFYICISHVQAMGRSISPEFD 297
Query: 289 VDILEPSGMFVLKCDRNYQP---------------PATSEEESGANSTDYMQRGLRDFQQ 333
V I PSG KC Y P +++ +++ MQRG+R ++Q
Sbjct: 298 VKIHHPSG----KCTLKYCPQIDCYVSSSTSSQRSDSSNPSRLRTITSNIMQRGVRRWEQ 353
Query: 334 IV 335
+
Sbjct: 354 FL 355
>Glyma09g26950.1
Length = 374
Score = 351 bits (901), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 186/362 (51%), Positives = 237/362 (65%), Gaps = 34/362 (9%)
Query: 1 MSMMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIF 60
MS ++ + DF+ L DMS+KIL LDDP DL+RVS VS SW +VI LCKQLCL++F
Sbjct: 1 MSEVKNKVDFIQLLGPDMSIKILTHLDDPCDLIRVSAVSSSWHRFVIEQGLCKQLCLKMF 60
Query: 61 PQLSRVTRVVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKT 120
P++S V +VE + +GS + W +L+R HRVYA+LA + + NCI+K+
Sbjct: 61 PEISGVAHIVELDNIIEPLINTLGSY--VNWESLKRIHRVYAFLASGL-TPMRKNCISKS 117
Query: 121 IVASSTDNFPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEIN 180
I ASSTDN+P+ESI +TLEP D R SYWSS G S+P+VPETL Y+LAS++C+VTEI
Sbjct: 118 ISASSTDNYPEESILHTLEPGDRTQYRASYWSSKGESHPSVPETLVYKLASKLCLVTEIY 177
Query: 181 IQPFQAYFQMGGPIYSAKSVRFKMGHIN------------ASLDASADEKIVWTYTSPEF 228
+ PFQAYFQ G PIYSAK+VRF+MGH A+ D D + +WTYTSPEF
Sbjct: 178 VHPFQAYFQHGFPIYSAKAVRFRMGHPRHPMELESAVDKMATNDVLGDNQFIWTYTSPEF 237
Query: 229 PMTQENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFS 288
PM QEN LQ FKLPEPVLCIGG+L VELLGRVQ+QEMD L YICISHVQA+G +SP F
Sbjct: 238 PMFQENRLQKFKLPEPVLCIGGVLLVELLGRVQKQEMDELFYICISHVQAMGRSISPEFD 297
Query: 289 VDILEPSGMFVLKCDRNYQP---------------PATSEEESGANSTDYMQRGLRDFQQ 333
V I PSG KC Y P +++ +++ MQRG+R ++Q
Sbjct: 298 VKIHHPSG----KCTLKYCPQIDCYVSSSTSSQRSDSSNPSRLRTITSNIMQRGVRRWEQ 353
Query: 334 IV 335
+
Sbjct: 354 FL 355
>Glyma16g32240.1
Length = 217
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 72/127 (56%), Gaps = 22/127 (17%)
Query: 233 ENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDIL 292
EN LQ FKLPEPVLCIGG+L VELLGRVQ+QEMD L YICISHVQ +G LL P F V I
Sbjct: 87 ENRLQKFKLPEPVLCIGGVLLVELLGRVQKQEMDELFYICISHVQVMGRLLFPEFDVKIH 146
Query: 293 EPSGMFVLKCDRNYQPPATSEEESGAN---------------STDYMQRGLRDFQQIVTI 337
SG KC Y P S + ++ MQRG+R ++Q
Sbjct: 147 HWSG----KCTLKYCPQTDCYMSSPTSSPRSNSSNPSRLRTITSSIMQRGVRRWEQ---F 199
Query: 338 LRGHVIG 344
L G ++G
Sbjct: 200 LLGALLG 206
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 1 MSMMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIF 60
MS + + DF+ L DMS+KIL LDDP DL+RVS VS SW +VI + LCKQLCL++F
Sbjct: 1 MSEVRNKVDFIQLLGPDMSIKILTHLDDPCDLIRVSSVSSSWHRFVIEHGLCKQLCLKMF 60
Query: 61 PQLSRVTRVVETN 73
P++S V ++E +
Sbjct: 61 PEISGVAHIIELD 73
>Glyma16g32240.2
Length = 152
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%)
Query: 1 MSMMECRKDFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIF 60
MS + + DF+ L DMS+KIL LDDP DL+RVS VS SW +VI + LCKQLCL++F
Sbjct: 1 MSEVRNKVDFIQLLGPDMSIKILTHLDDPCDLIRVSSVSSSWHRFVIEHGLCKQLCLKMF 60
Query: 61 PQLSRVTRVVETN 73
P++S V ++E +
Sbjct: 61 PEISGVAHIIELD 73
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 233 ENELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGS 281
EN LQ FKLPEPVLCIGG+L VELLGRVQ+QEMD L YI +++ + S
Sbjct: 87 ENRLQKFKLPEPVLCIGGVLLVELLGRVQKQEMDELFYIWKVYLEILPS 135