Miyakogusa Predicted Gene

Lj1g3v2432910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2432910.1 tr|B9IGN9|B9IGN9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_778006 PE=4
SV=1,45.99,1e-17,seg,NULL,CUFF.29032.1
         (365 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g44180.1                                                        79   1e-14
Glyma09g41520.1                                                        60   3e-09

>Glyma18g44180.1 
          Length = 642

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 51/78 (65%), Gaps = 9/78 (11%)

Query: 274 NYQNHLSSTNALSTPQANTP--YTSAVRGDPV-------ASSGQSNPPNATGQRPFVPSY 324
           NYQNH  +TN +S P ANT   Y+SA    PV       +      P +ATGQ+PFVPSY
Sbjct: 543 NYQNHSPATNMISAPPANTATSYSSAPGVRPVQHNNSFHSRGTGGTPASATGQKPFVPSY 602

Query: 325 RLFEDLNVFGNTDGRAKV 342
           RLFEDLNVFGNTDGR K+
Sbjct: 603 RLFEDLNVFGNTDGRVKM 620


>Glyma09g41520.1 
          Length = 506

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 28/32 (87%)

Query: 311 PPNATGQRPFVPSYRLFEDLNVFGNTDGRAKV 342
           P +ATGQ+ FVPSYRLFEDLNVFGNTD R K+
Sbjct: 453 PASATGQKLFVPSYRLFEDLNVFGNTDARVKM 484