Miyakogusa Predicted Gene
- Lj1g3v2313060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2313060.1 Non Chatacterized Hit- tr|I1R565|I1R565_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,30.16,4e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.28871.1
(505 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma07g18030.1 291 1e-78
Glyma18g42850.1 290 4e-78
Glyma18g03250.1 215 1e-55
Glyma11g35090.1 209 4e-54
Glyma14g06550.1 189 5e-48
Glyma02g42350.1 189 5e-48
Glyma16g34680.1 52 1e-06
>Glyma07g18030.1
Length = 515
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 170/270 (62%), Positives = 188/270 (69%), Gaps = 3/270 (1%)
Query: 231 FRVSAPPTRPSSASKARP--IVAKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTS 288
F SAPPTRPSSASKARP +VAKNP QSRG SPSV+SRPWEPSQMPG+SL+APPNLKTS
Sbjct: 247 FGASAPPTRPSSASKARPGPLVAKNPVQSRGSSPSVRSRPWEPSQMPGFSLDAPPNLKTS 306
Query: 289 LPERPASATRSRPGAQNTXXXXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSR 348
L +RPASATR+RPGA N+ KGR STG N++SMQ LSR
Sbjct: 307 LSDRPASATRTRPGAPNSRSSSVDASSNAKSRRQASTPSKGRTSTGLVHNNHTSMQVLSR 366
Query: 349 ARFTDGDHDSPGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLS 408
ARFTDGD +SP +GTKMVERVVNMRKLAPPK ED G TLS
Sbjct: 367 ARFTDGDDESPVMIGTKMVERVVNMRKLAPPKHEDHHSSRENSYGKSSSGSSGF-GTTLS 425
Query: 409 KTSLDMAKRHMDIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTA 468
K SLDMA RHMDIRRS QGN+RP+VT+IPASS Y+VRS S+SKSRT+S SDSPLATSST
Sbjct: 426 KKSLDMAMRHMDIRRSFQGNMRPLVTSIPASSMYSVRSGSSSKSRTVSASDSPLATSSTT 485
Query: 469 XXXXXXXXXXXXYDGSEIGENDFGSERGNS 498
YDGSE ENDF SE+GNS
Sbjct: 486 SSEPSVNNSSISYDGSEAEENDFASEKGNS 515
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 1 MVMKERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXXXXR-GSSMISKTMILVPP 59
MVMK+RDEELSLFLE+RRR G SMISK + VPP
Sbjct: 1 MVMKQRDEELSLFLELRRREKENEKNNLVLLQNSEELHLSNLESNDGGSMISKIVSSVPP 60
Query: 60 RKTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRVA 119
RK VE FLNSE KS+YEWLL PPD+P FPTLEK+SQIS K++ ETRNARPTALKPRVA
Sbjct: 61 RKNEVEEFLNSEIDKSDYEWLLAPPDAPLFPTLEKESQISVKSEQETRNARPTALKPRVA 120
Query: 120 NIQAEPAARSNAVSKNHAAVTGLSSCTNG 148
NIQA+PA RSN VSK+HA++ GL S TNG
Sbjct: 121 NIQADPALRSNVVSKHHASMPGLGSSTNG 149
>Glyma18g42850.1
Length = 515
Score = 290 bits (741), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 168/270 (62%), Positives = 187/270 (69%), Gaps = 3/270 (1%)
Query: 231 FRVSAPPTRPSSASKARP--IVAKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTS 288
F +APPTRPSSASKARP IVAKNP QSRG SPSV+SRPWEPSQ+PG+SL+APPNLKTS
Sbjct: 247 FGANAPPTRPSSASKARPGPIVAKNPVQSRGSSPSVRSRPWEPSQIPGFSLDAPPNLKTS 306
Query: 289 LPERPASATRSRPGAQNTXXXXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSR 348
L +RPASATR+RPGA N+ KGR +TG N++SMQ LSR
Sbjct: 307 LSDRPASATRTRPGALNSRSSSVDASSNAKSRRQASTPSKGRTTTGLVHNNHTSMQVLSR 366
Query: 349 ARFTDGDHDSPGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLS 408
ARFTDGD +SP +GTKMVERVVNMRKLAPPK ED TLS
Sbjct: 367 ARFTDGDDESPVVIGTKMVERVVNMRKLAPPKHEDHHSSRDNSYGKSSSGSSGFG-TTLS 425
Query: 409 KTSLDMAKRHMDIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTA 468
K SLDMA RHMDIRRSIQGNLRP+VT+IPASS Y+VRS S+SKSRT+S SDSPLATSST
Sbjct: 426 KKSLDMAMRHMDIRRSIQGNLRPLVTSIPASSMYSVRSGSSSKSRTVSASDSPLATSSTT 485
Query: 469 XXXXXXXXXXXXYDGSEIGENDFGSERGNS 498
YDGS + ENDF ERGNS
Sbjct: 486 SSEPSVNTNSMSYDGSGVEENDFACERGNS 515
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Query: 1 MVMKERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXX-XXRGSSMISKTMILVPP 59
MVMK+RDEELSLFLEMRRR G+SMISK + VPP
Sbjct: 1 MVMKQRDEELSLFLEMRRREKENEKNNLLLLQNSEELDLSNLGSNHGASMISKMVSSVPP 60
Query: 60 RKTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRVA 119
RK G+E FLNSEN KS+YEWLL PPD+P FPTLEK+SQIS K++ ETRNARPTALKPRVA
Sbjct: 61 RKNGIEEFLNSENDKSDYEWLLAPPDAPLFPTLEKESQISVKSEQETRNARPTALKPRVA 120
Query: 120 NIQAEPAARSNAVSKNHAAVTGLSSCTNG 148
NIQAEPA+RS+ +SK+HA++ GL S TNG
Sbjct: 121 NIQAEPASRSHVISKHHASMPGLGSSTNG 149
>Glyma18g03250.1
Length = 601
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/265 (49%), Positives = 159/265 (60%), Gaps = 4/265 (1%)
Query: 240 PSSASKARPIVAKNPAQ-SRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASATR 298
P + K P+ ++ PA SRG SP+V+SRPW+PS+MPG+SL+APPNL+T+LP+RP SATR
Sbjct: 335 PVTVRKQAPVNSRQPASPSRGTSPTVRSRPWKPSEMPGFSLDAPPNLRTTLPDRPLSATR 394
Query: 299 SRPGAQNTXXXXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSRARFTDGDHDS 358
RPGA + +GRAS G ++ +SM A+SR D+ S
Sbjct: 395 GRPGAPTSRSSSVEPSSSGRPRRQSCSPSRGRASNGSVHISGNSMPAVSRGHSKVNDNVS 454
Query: 359 PGEVGTKMVERVVNMRKLAPPKREDXXX-XXXXXXXXXXXXXXXXFGCTLSKTSLDMAKR 417
P +GTKMVERV+NMRKL PP ED FG TLSK SLDMA R
Sbjct: 455 PVVMGTKMVERVINMRKLVPPMIEDKNSPRSNLSGKSASSPDSSGFGRTLSKKSLDMAIR 514
Query: 418 HMDIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTAXXXXXXXXX 477
HMDIRR+I GNLRP++TNIPASS Y+VRS S RTISVS SP ATSS A
Sbjct: 515 HMDIRRTIPGNLRPLMTNIPASSLYSVRSGS-HHGRTISVSGSPHATSSNASSELSVNQN 573
Query: 478 XXXYDGSEIGENDFGSERGNSSPMS 502
D SE+ ++D GSER SP S
Sbjct: 574 GICLDSSEV-DDDIGSERCGQSPAS 597
Score = 105 bits (263), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 2 VMKERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXXXXRGSSMISKTMILVPPRK 61
VMKE++EEL+LFLEM++R IS + P RK
Sbjct: 30 VMKEKEEELALFLEMKKREKERNDLLLNSSEEFDAPLGSNGGANPIFNISSS-TPAPVRK 88
Query: 62 TGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRVANI 121
TGV+ FLNSEN K++Y+WLLTPP +P FP+LE +S+ + + + T RP ALK R+AN
Sbjct: 89 TGVDDFLNSENDKNDYDWLLTPPGTPLFPSLEMESRKTVMSQLGTPTTRPVALKSRLANH 148
Query: 122 QAEPAARSNAVSK 134
Q+EPA R+N VSK
Sbjct: 149 QSEPAGRTNLVSK 161
>Glyma11g35090.1
Length = 614
Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/263 (48%), Positives = 158/263 (60%), Gaps = 4/263 (1%)
Query: 242 SASKARPIVAKNPAQ-SRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASATRSR 300
+A K P+ ++ A SRG SP+V+SRPW+PS+MPG+SL+APPNL+T+LP+RP SATR R
Sbjct: 350 TARKQAPVNSRQAAPPSRGTSPTVRSRPWKPSEMPGFSLDAPPNLRTTLPDRPLSATRGR 409
Query: 301 PGAQNTXXXXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSRARFTDGDHDSPG 360
PGA + +GRAS G ++ +SM A++R D+ SP
Sbjct: 410 PGAPTSRSSSVEPSSSGRPRRQSCSPSRGRASNGSVHISGNSMPAVNRGHSKVNDNVSPV 469
Query: 361 EVGTKMVERVVNMRKLAPPKREDXXX-XXXXXXXXXXXXXXXXFGCTLSKTSLDMAKRHM 419
+G KMVERV+NMRKLAPP ED FG TLSK SLDMA RHM
Sbjct: 470 VMGNKMVERVINMRKLAPPMIEDKNSPHSNLSGRSASSPDSSGFGRTLSKKSLDMAIRHM 529
Query: 420 DIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTAXXXXXXXXXXX 479
DIRR+I GNLRP++TNIPASS Y+VRS S RTISVS SP ATSS A
Sbjct: 530 DIRRTIPGNLRPLMTNIPASSLYSVRSGS-HHGRTISVSGSPHATSSNASSELSVNQNGI 588
Query: 480 XYDGSEIGENDFGSERGNSSPMS 502
D SE+ ++D GSER SP S
Sbjct: 589 CLDSSEV-DDDIGSERCGQSPAS 610
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 2 VMKERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXXXXRGSSMISKTMILVPPRK 61
VMKE++EEL+LFLEM++R IS + P RK
Sbjct: 30 VMKEKEEELALFLEMKKREKERNDLLLNSSEEFDAALVSNGGANPIFNISSS-TPAPVRK 88
Query: 62 TGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRVANI 121
TGV+ FLNSEN K++Y+WLLTPP +P FP+LE +S+ + + + T RP ALK R+AN
Sbjct: 89 TGVDDFLNSENDKNDYDWLLTPPGTPLFPSLEMESRKTVMSRLGTPTTRPVALKSRLANH 148
Query: 122 QAEPAARSNAVSK 134
Q+EPA R+N VSK
Sbjct: 149 QSEPAGRTNLVSK 161
>Glyma14g06550.1
Length = 658
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 124/268 (46%), Positives = 157/268 (58%), Gaps = 2/268 (0%)
Query: 233 VSAPPTRPSSASKARPIVAKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPER 292
VS+P + SS SK+ P++++ P SRG SP+VKSR W+PS+MPG+SL+APPNL+T+LPER
Sbjct: 386 VSSPSVKTSSVSKSAPVISRQPVPSRGTSPTVKSRQWKPSEMPGFSLDAPPNLRTTLPER 445
Query: 293 PASATRSRPGAQNTXXXXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSRARFT 352
S TR RPGA N +GR+S G + SSM A++RA
Sbjct: 446 SLSTTRGRPGAPNLRSSSVEPASNGRPRRQSCSPSRGRSSNGISRPTGSSMPAVNRAYSK 505
Query: 353 DGDHDSPGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSL 412
D+ SP +GTKMVERV+NMRKLAPP+ +D FG +LSK SL
Sbjct: 506 ANDNVSPVVMGTKMVERVINMRKLAPPRLDDKNSFHNLSGKSSSSPDSSGFGRSLSKKSL 565
Query: 413 DMAKRHMDIRRSIQGNLRP-VVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTAXXX 471
DMA RHMDIRR G+LRP ++T IPASS Y+VRS +SRT S+S SP ATSS A
Sbjct: 566 DMAIRHMDIRRRAPGDLRPSLMTKIPASSMYSVRSG-LQRSRTGSISGSPHATSSNASSE 624
Query: 472 XXXXXXXXXYDGSEIGENDFGSERGNSS 499
D SEI ++ G SS
Sbjct: 625 VSVNQNGLCLDNSEIDDDIVSVRSGQSS 652
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 5 ERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXXXXRGSSMISKTMILVPP----- 59
+RD+EL+LFLEMR R GS + + VPP
Sbjct: 35 DRDDELALFLEMRNREKERNDLLLRAAEDFDAAAPL-----GSDPGNSPLFNVPPAASAP 89
Query: 60 -RKTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRV 118
RKTG + FLNSEN K++Y+WLLTPP +P FP+LE ++ + + + RPT LK R
Sbjct: 90 ARKTGADDFLNSENDKNDYDWLLTPPGTPLFPSLEMETSKTVMSQLGAPTVRPTPLKARF 149
Query: 119 ANIQAEPAARSNAVSKNHAAVTGLSSCTNG 148
AN E RSN VSK A+ GL+S G
Sbjct: 150 ANSPLEDTGRSNFVSKQPASSPGLTSSGGG 179
>Glyma02g42350.1
Length = 693
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 123/268 (45%), Positives = 156/268 (58%), Gaps = 2/268 (0%)
Query: 233 VSAPPTRPSSASKARPIVAKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPER 292
VS+P + SS SK+ P++++ P SRG SP+VKSR W+PS+MPG+SL+APPNL+TSLPER
Sbjct: 421 VSSPSVKTSSVSKSAPVMSRQPVPSRGTSPTVKSRSWKPSEMPGFSLDAPPNLRTSLPER 480
Query: 293 PASATRSRPGAQNTXXXXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSRARFT 352
P S TR RPGA N +G ++ G + SSM A++RA
Sbjct: 481 PLSTTRGRPGASNPRSSSVEPTSSGRPRRQSCSPSRGCSNNGISRSTGSSMPAVNRAYSK 540
Query: 353 DGDHDSPGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSL 412
D+ SP +GTKMVERV+NMRKLAPP+ +D FG +LSK SL
Sbjct: 541 ANDNVSPVVMGTKMVERVINMRKLAPPRMDDKNSFHNLSGKSSSSPDSSGFGRSLSKKSL 600
Query: 413 DMAKRHMDIRRSIQGNLRP-VVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTAXXX 471
DMA RHMDIRR GNLRP ++T IPASS Y+VRS +SRT S+S SP A+ S A
Sbjct: 601 DMAIRHMDIRRRAPGNLRPSLMTKIPASSMYSVRSG-PQRSRTASISGSPHASGSNASSE 659
Query: 472 XXXXXXXXXYDGSEIGENDFGSERGNSS 499
D SEI ++ G SS
Sbjct: 660 VSVNENGLCIDNSEIDDDIVSVRSGQSS 687
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 11/120 (9%)
Query: 5 ERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXXXXRGSSMISKTMILVP------ 58
+RD+EL+LFLEMR R GS+ + T+ VP
Sbjct: 35 DRDDELALFLEMRNREKERNDLLRRAAEDFDAAAPL-----GSNPGNSTLFNVPSAAPAQ 89
Query: 59 PRKTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRV 118
RKTG + FLNSEN K++Y+WLLTPP +P FP+LE ++ + + + RPT LK R
Sbjct: 90 ARKTGADDFLNSENDKNDYDWLLTPPGTPLFPSLEMETSKTVMSQLGAPTVRPTPLKART 149
>Glyma16g34680.1
Length = 416
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 75/197 (38%), Gaps = 53/197 (26%)
Query: 250 VAKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLP-ERPASATRSRPGAQNTXX 308
V +NPA R +P P + LE PPNL+T+LP +RP SA RSRPGA T
Sbjct: 169 VGRNPATPR----------LQPVVPPDFPLETPPNLRTTLPADRPVSAGRSRPGAVVTLP 218
Query: 309 XXXXXXXXXXXXXXXXXXXKGRASTGFALLNYSSMQ---ALSRARFTDGDHDSPGEVGTK 365
A +N S Q +R R ++ S G
Sbjct: 219 SKPNSEMQ-------------------APVNMSRRQPSPIANRGRLSEYTAKSRGHANAA 259
Query: 366 MVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSLDMAKRHMDIRRSI 425
VV R G T+SK SLDMA RHMD+R S
Sbjct: 260 DASEVVARR---------------SAKSSTTASENNVLGRTISKKSLDMAIRHMDVRNS- 303
Query: 426 QGNLRPVVTNIPASSTY 442
G LR ++P+++ Y
Sbjct: 304 SGTLR----SVPSATLY 316