Miyakogusa Predicted Gene

Lj1g3v2296410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2296410.1 CUFF.28831.1
         (175 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g01430.2                                                        62   2e-10
Glyma06g01430.1                                                        62   3e-10

>Glyma06g01430.2 
          Length = 384

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 52/112 (46%), Gaps = 34/112 (30%)

Query: 1  MLHCLNTPGSLAGNCSDMTVLERQRIKLP--------QGNGFNCVFPXXX---------X 43
          MLHC NT G+LA    DMTVLERQR ++          GN FN VF              
Sbjct: 1  MLHCANTSGNLAV-AGDMTVLERQRARMKWQEEQGYFSGNSFNGVFSSSSLHVHDSIMVA 59

Query: 44 XXXXXXLAEVVAQAHSIKFHMXXXXXXXXXXXXXDLNSAISRTFSCPPTLVE 95
                LAEVVAQA +   +                +S+ISRTFSCPP LVE
Sbjct: 60 ADSGCALAEVVAQAQARSTN----------------SSSISRTFSCPPALVE 95


>Glyma06g01430.1 
          Length = 390

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 52/112 (46%), Gaps = 34/112 (30%)

Query: 1  MLHCLNTPGSLAGNCSDMTVLERQRIKLP--------QGNGFNCVFPXXX---------X 43
          MLHC NT G+LA    DMTVLERQR ++          GN FN VF              
Sbjct: 1  MLHCANTSGNLAV-AGDMTVLERQRARMKWQEEQGYFSGNSFNGVFSSSSLHVHDSIMVA 59

Query: 44 XXXXXXLAEVVAQAHSIKFHMXXXXXXXXXXXXXDLNSAISRTFSCPPTLVE 95
                LAEVVAQA +   +                +S+ISRTFSCPP LVE
Sbjct: 60 ADSGCALAEVVAQAQARSTN----------------SSSISRTFSCPPALVE 95