Miyakogusa Predicted Gene

Lj1g3v2268410.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2268410.1 tr|Q8LCY3|Q8LCY3_ARATH At1g76185 OS=Arabidopsis
thaliana GN=At1g76185 PE=4 SV=1,84.06,2e-18,seg,NULL,CUFF.28769.1
         (79 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02220.1                                                        73   5e-14
Glyma04g02120.1                                                        72   1e-13

>Glyma06g02220.1 
          Length = 132

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 41/53 (77%)

Query: 11  RVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 63
           RVDVVVFVIWELVILAFLVFSVVSLYFKHI+LAF            MKITKQV
Sbjct: 64  RVDVVVFVIWELVILAFLVFSVVSLYFKHIRLAFILVCITILLLLCMKITKQV 116


>Glyma04g02120.1 
          Length = 107

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 41/53 (77%)

Query: 11 RVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 63
          RVDVV+FVIWELVILAFLVFSVVSLYFKHI+LAF            MKITKQV
Sbjct: 39 RVDVVLFVIWELVILAFLVFSVVSLYFKHIRLAFILVCITILLLLCMKITKQV 91