Miyakogusa Predicted Gene

Lj1g3v2251580.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2251580.1 Non Chatacterized Hit- tr|I1JSZ4|I1JSZ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1351 PE=,76.24,0,S4
RNA-binding domain,RNA-binding S4 domain; no description,RNA-binding
S4 domain; S4,RNA-binding S4,CUFF.28745.1
         (294 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02320.1                                                       427   e-120
Glyma06g02370.1                                                       332   4e-91

>Glyma04g02320.1 
          Length = 450

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/303 (73%), Positives = 247/303 (81%), Gaps = 12/303 (3%)

Query: 1   MILLHSSGYCRVSTPRAFKFQ--TPLSPSLLFSATNXXXXXXXXXXXXGFADNSDSGDGG 58
           M+  HS G CRVS  RAF+FQ  T  SPSL  SAT+                  DS   G
Sbjct: 1   MLSFHSCGCCRVSASRAFQFQFQTAPSPSLFLSATSYKFRSATASAAS--GSAGDSDSDG 58

Query: 59  EPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNK 118
           EP+ N++GV+LEE VD+RIGSGK RLD+WIS+RINGISRARVQSSIKSGLVHVNGRVV+K
Sbjct: 59  EPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDK 118

Query: 119 VSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGT 178
           VSFNVKSGDEIKCTIAELQ+LRAVP++IPLDIVYEDEH+LVINKPAHMVVHPAPGNTSGT
Sbjct: 119 VSFNVKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGT 178

Query: 179 LVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQ-ASSCEG-------SAASIRPGI 230
           LVNGILHHCNLPN EFS ++AL+ TEDSDDE NS+   ASSCEG       ++ SIRPGI
Sbjct: 179 LVNGILHHCNLPNVEFSKDEALSDTEDSDDEFNSYISLASSCEGLNSRLSVASNSIRPGI 238

Query: 231 VHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDP 290
           VHRLDKGTSGLLVVAKDEHSH KLSEQFK RTIKR+YVSLT GVPTPVAGR+EV VGRD 
Sbjct: 239 VHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDT 298

Query: 291 NNR 293
           NNR
Sbjct: 299 NNR 301


>Glyma06g02370.1 
          Length = 409

 Score =  332 bits (850), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 181/253 (71%), Positives = 201/253 (79%), Gaps = 24/253 (9%)

Query: 53  DSGDGGEPRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVN 112
           D+   GEP+ N++GV+LEE VD+RIGSGK RLD+WIS+RINGI RARVQSSIKSGLVHVN
Sbjct: 23  DTDSDGEPKLNFSGVRLEEAVDSRIGSGKLRLDNWISSRINGIRRARVQSSIKSGLVHVN 82

Query: 113 GRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMV---VH 169
           GRVV+KVSFNVKSGDEIK          AV E+IPLDIVYEDEH+LVINKPAHM+    H
Sbjct: 83  GRVVDKVSFNVKSGDEIK----------AVTENIPLDIVYEDEHVLVINKPAHMLDSQFH 132

Query: 170 PAPGNTSGTLVNGILHHCNLPNAEFSN-EDALAYTEDSDDELNSFFQ-ASSCEG------ 221
               NTSG LVNGILHHCNLPN EFS  E+AL+ TEDSDDE NS+   AS CEG      
Sbjct: 133 YLV-NTSGMLVNGILHHCNLPNVEFSKEEEALSDTEDSDDEFNSYRSLASFCEGLNSRLS 191

Query: 222 -SAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAG 280
            ++ SIR GIVHRLDKGTSG L VAKDEHSH KLSEQFK  TIKR+YVSLT G+PTPVAG
Sbjct: 192 VASNSIRSGIVHRLDKGTSG-LPVAKDEHSHMKLSEQFKQHTIKRIYVSLTAGLPTPVAG 250

Query: 281 RIEVAVGRDPNNR 293
           R+EV VGRDPNNR
Sbjct: 251 RVEVPVGRDPNNR 263