Miyakogusa Predicted Gene

Lj1g3v2185240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2185240.1 tr|B9GQS6|B9GQS6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_550861 PE=4
SV=1,45.56,1e-16,seg,NULL,CUFF.28704.1
         (248 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g02560.1                                                        72   8e-13
Glyma06g02590.1                                                        50   2e-06

>Glyma04g02560.1 
          Length = 214

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 60/112 (53%), Gaps = 14/112 (12%)

Query: 129 NGTKNTSLTAKKSKPTKREEANKRSSAAQSLISASENRWGPDPKDLPKHLPVVLTSKEEP 188
           N +++ SLT KKSKPTKREEA KRS      ++ S+NRWGPDPKDLPK   VVL      
Sbjct: 109 NRSRDMSLTPKKSKPTKREEAKKRS------VTQSDNRWGPDPKDLPK---VVLGMGNNH 159

Query: 189 VDMFLGSSGFNXXXXXXXXXXXXXXXXXXXXXCNAEASAAGSVVDDDGATNN 240
            D+  G+  FN                     CNAE +A G    DDGATNN
Sbjct: 160 HDVVSGAV-FN-LAPPPSSLPLPKFSLRSKLGCNAETAAGGV---DDGATNN 206


>Glyma06g02590.1 
          Length = 185

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 140 KSKPTKREEANKRSSAAQSLISASENRWGPDPKDLPKHLPVVLTSKEEPVDMFLGSSGFN 199
           K K   REEA KR    QS++S  +NRWGPDPKDLPK    V+       D+ +  + FN
Sbjct: 88  KKKNRSREEAKKRP-GTQSILS--DNRWGPDPKDLPK----VVLGMGNIDDVVVSGAVFN 140

Query: 200 XXXXXXXXXXXXXXXXXXXXXCNAEASAAGSVVDDDGATNN 240
                                C AE +AAG V  DDGATNN
Sbjct: 141 -LAPPPSSLPLPNFSLRSKHGCKAE-TAAGCV--DDGATNN 177