Miyakogusa Predicted Gene

Lj1g3v2157640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2157640.1 tr|G7KA43|G7KA43_MEDTR F-box protein SKIP19
OS=Medicago truncatula GN=MTR_5g062080 PE=4
SV=1,64.06,8e-17,F-box,F-box domain, cyclin-like; F-box domain,F-box
domain, cyclin-like; no description,NULL,CUFF.28656.1
         (82 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g09890.1                                                        68   2e-12
Glyma13g29200.1                                                        67   4e-12

>Glyma15g09890.1 
          Length = 318

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 35/50 (70%)

Query: 16 NWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHIIDMTN 65
          NWL+LPRDV   I  +LG +EI+  A +VCS+W  I K+PL+W  IDM N
Sbjct: 19 NWLDLPRDVVCTIFQKLGAIEILTRAQRVCSVWRGISKEPLLWRTIDMRN 68


>Glyma13g29200.1 
          Length = 311

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 1  MMASKEVEGVNTNGPNWLELPRDVTTNILLRLGVVEIVMSASQVCSLWWNICKDPLMWHI 60
          M +SKE      N   WL+LPRDV   I  +LG  EI+  A  VCS+W  I K+PL+W  
Sbjct: 1  MSSSKEAAAEERN---WLDLPRDVLCTIFQKLGATEILTRAQGVCSVWRAISKEPLLWRT 57

Query: 61 IDMTNL 66
          IDM NL
Sbjct: 58 IDMRNL 63