Miyakogusa Predicted Gene

Lj1g3v2139540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2139540.1 tr|D7MEZ7|D7MEZ7_ARALL Predicted protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,67.21,1e-16,seg,NULL; RING FINGER PROTEIN 127,NULL; PUA
domain-like,PUA-like domain; LON,Peptidase S16, lon N-te,CUFF.28885.1
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g03100.1                                                       107   4e-24
Glyma06g03140.1                                                       106   5e-24
Glyma14g07680.1                                                        75   2e-14
Glyma03g22020.1                                                        62   1e-10
Glyma14g25150.1                                                        47   4e-06

>Glyma04g03100.1 
          Length = 285

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 63/105 (60%), Gaps = 5/105 (4%)

Query: 25  NPTRLSINPNFPSSSTTH-----VLXXXXXXXGGNLTCSASSFSEKHHTDSPRSDDXXXX 79
           NP  LS+NP  P+S         +L          L CSASSFSEKHHT+S  SDD    
Sbjct: 16  NPITLSLNPKSPTSPPQQHFNLDILRHRRRRPNSTLRCSASSFSEKHHTNSSNSDDVVEL 75

Query: 80  XXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYTAA 124
                      GAILPLQIFEFRYRIMMHTLLHTDLRFG+IYT A
Sbjct: 76  PLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLHTDLRFGIIYTDA 120


>Glyma06g03140.1 
          Length = 283

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 25  NPTRLSINPNFPSSSTTHV----LXXXXXXXGGNLTCSASSFSEKHHTDSPRSDDXXXXX 80
           NP  LS+NP  P+S   H     L          L CSASSFSEKHHT+S  SDD     
Sbjct: 15  NPITLSLNPKSPTSPPQHFNLDFLRHRRRRPASTLRCSASSFSEKHHTNSSNSDDVLELP 74

Query: 81  XXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYTAA 124
                     GAILPLQIFEFRYRIMMHTLLHTDLRFGVIY  A
Sbjct: 75  LFPLPLVLFPGAILPLQIFEFRYRIMMHTLLHTDLRFGVIYNDA 118


>Glyma14g07680.1 
          Length = 272

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 41/68 (60%), Gaps = 7/68 (10%)

Query: 57  CSASSFSEKHHTDSPRSDDXXXXXXXXXXXXXXXGAILPLQIFEFRYRIMMHTLLHTDLR 116
           CSASS  + H       DD               GAILPLQIFEFRYRIMMHTLLHTDLR
Sbjct: 46  CSASSEKQPH-------DDALELPLFPLPLVLFPGAILPLQIFEFRYRIMMHTLLHTDLR 98

Query: 117 FGVIYTAA 124
           FGVIY  A
Sbjct: 99  FGVIYNDA 106


>Glyma03g22020.1 
          Length = 159

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 30/34 (88%)

Query: 91  GAILPLQIFEFRYRIMMHTLLHTDLRFGVIYTAA 124
           GAILPLQIFEFRYRIMMH LLHT+L FGVIY  A
Sbjct: 28  GAILPLQIFEFRYRIMMHRLLHTNLCFGVIYNNA 61


>Glyma14g25150.1 
          Length = 49

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 98  IFEFRYRIMMHTLLHTDLRFGVIYT 122
           IF+FRY IMMHTLLHT+L FG+IYT
Sbjct: 1   IFKFRYHIMMHTLLHTNLYFGIIYT 25