Miyakogusa Predicted Gene

Lj1g3v2125960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2125960.1 Non Chatacterized Hit- tr|D7L1U6|D7L1U6_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,70,2e-19,Rer1,Retrieval of early ER protein Rer1; PROTEIN
RER1,Retrieval of early ER protein
Rer1,NODE_58446_length_239_cov_286.460266.path1.1
         (65 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g39640.1                                                       114   3e-26
Glyma05g20940.1                                                       111   2e-25
Glyma11g05620.1                                                       109   6e-25
Glyma17g18430.1                                                       107   2e-24
Glyma06g01400.1                                                        91   2e-19
Glyma06g01410.2                                                        88   2e-18
Glyma06g01410.1                                                        88   2e-18
Glyma04g01370.2                                                        88   2e-18
Glyma04g01370.1                                                        88   2e-18
Glyma04g01360.1                                                        86   9e-18

>Glyma01g39640.1 
          Length = 191

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/65 (84%), Positives = 60/65 (92%), Gaps = 1/65 (1%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFFSAFDVPVFWPILLFYWV LFTLTMRRQI+HMI+YKYVPFSFGK+RYDGKRA AE T
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKLRYDGKRA-AEGT 186

Query: 61  TLSDD 65
           + + D
Sbjct: 187 SPTMD 191


>Glyma05g20940.1 
          Length = 198

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 58/65 (89%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFFSAFDVPVFWPILLFYWV LF+LTMRRQI+HMI+YKY+PFS GK RYD KRA  E T
Sbjct: 134 MTFFSAFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFSSGKQRYDVKRAPPEIT 193

Query: 61  TLSDD 65
           +LS+D
Sbjct: 194 SLSED 198


>Glyma11g05620.1 
          Length = 191

 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 58/65 (89%), Gaps = 1/65 (1%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFFSAFDVPVFWPILLFYWV LFTLTMRRQI+HMI+YKYVPFSFGK RY GKRA AE T
Sbjct: 128 MTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVPFSFGKQRYAGKRA-AEGT 186

Query: 61  TLSDD 65
           + + D
Sbjct: 187 SPTLD 191


>Glyma17g18430.1 
          Length = 197

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 56/63 (88%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKRASAEST 60
           MTFFS FDVPVFWPILLFYWV LF+LTMRRQI+HMI+YKY+PFS GK RYD KRA  E+T
Sbjct: 131 MTFFSVFDVPVFWPILLFYWVVLFSLTMRRQISHMIKYKYLPFSSGKQRYDVKRAPPETT 190

Query: 61  TLS 63
           +LS
Sbjct: 191 SLS 193


>Glyma06g01400.1 
          Length = 194

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 45/54 (83%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRYDGKR 54
           MTFFS FDVPVFWPILL YW  LF LTMRRQ+AHMI+YKY+PF+ GK +Y G +
Sbjct: 130 MTFFSLFDVPVFWPILLCYWFVLFVLTMRRQVAHMIKYKYIPFNLGKQKYSGNK 183


>Glyma06g01410.2 
          Length = 198

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRY 50
           MTFFS FDVPVFWPILL YWV LF LTMRRQ+AHM++YKY+PF+ GK +Y
Sbjct: 134 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKY 183


>Glyma06g01410.1 
          Length = 198

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRY 50
           MTFFS FDVPVFWPILL YWV LF LTMRRQ+AHM++YKY+PF+ GK +Y
Sbjct: 134 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKY 183


>Glyma04g01370.2 
          Length = 194

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRY 50
           MTFFS FDVPVFWPILL YWV LF LTMRRQ+AHM++YKY+PF+ GK +Y
Sbjct: 130 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKY 179


>Glyma04g01370.1 
          Length = 194

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 44/50 (88%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRY 50
           MTFFS FDVPVFWPILL YWV LF LTMRRQ+AHM++YKY+PF+ GK +Y
Sbjct: 130 MTFFSMFDVPVFWPILLCYWVVLFVLTMRRQVAHMMKYKYIPFNLGKQKY 179


>Glyma04g01360.1 
          Length = 196

 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 43/50 (86%)

Query: 1   MTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMRY 50
           MTFFS FDVPVFWPILL YW  LF LTMRRQ+AHM++YKY+PF+ GK +Y
Sbjct: 132 MTFFSLFDVPVFWPILLCYWFVLFVLTMRRQVAHMMKYKYIPFNLGKQKY 181