Miyakogusa Predicted Gene

Lj1g3v2095670.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2095670.1 Non Chatacterized Hit- tr|B9R6S8|B9R6S8_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,33.18,0.000000000000008,seg,NULL; coiled-coil,NULL,CUFF.28462.1
         (215 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g09390.1                                                       135   3e-32
Glyma11g00500.1                                                        61   8e-10
Glyma05g23210.1                                                        53   3e-07
Glyma17g16850.1                                                        53   3e-07
Glyma20g27370.1                                                        49   3e-06

>Glyma06g09390.1 
          Length = 253

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/209 (47%), Positives = 116/209 (55%), Gaps = 18/209 (8%)

Query: 1   MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQL-NHSLDKRKPNEDNTKVFEKLKA 59
           MLKQL NRNQRTKG  +K GFKIFTLI V IW+L+QL  +SLD+    E + K FE LKA
Sbjct: 1   MLKQLSNRNQRTKGFRVKLGFKIFTLIVVGIWVLYQLRQYSLDE----ERSAKRFENLKA 56

Query: 60  S-HESKKLGRKWFQPWI-NKPYGLMXXXXXXXXXXXXXQSI--GGXXXXXXXXXXXXXXX 115
              E+KKLGRK  QPW  NKPY LM               I  G                
Sbjct: 57  GLDETKKLGRKGLQPWTNNKPYELMDDTEENEHERDDVVVIQDGDKVEEEESEEVEDLID 116

Query: 116 XXXXXXXXXXXXXXXTMSLLEDKGHNEGEKDTY---EKNYKETGASRVVRIRRVTLSLGS 172
                           MSLLED    EGE+DT+   EK+ KE GASRV  + RVT SLGS
Sbjct: 117 EQDKEKEEQNEDEEGRMSLLED----EGEEDTHATREKHNKENGASRV--LMRVTKSLGS 170

Query: 173 EFEIGGLRKIKEAVEENSEKIVTEKLQKK 201
           EFE GGLRK+KE    NS+++ TEK +KK
Sbjct: 171 EFEFGGLRKVKEEEVGNSKRVGTEKQKKK 199


>Glyma11g00500.1 
          Length = 500

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 1  MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKPNEDN-TKVFEKLKA 59
          M+K+ P+RN R+KG  +K   +I  L+ V  WL++Q+ HS DK+K  E+N  KV    + 
Sbjct: 1  MIKRSPSRNNRSKGIKVKHVLQIILLLGVCFWLIYQVKHSHDKKKEFEENDAKVSVGTQT 60

Query: 60 SHESKKLGRKWFQP 73
          ++++ KLGRK   P
Sbjct: 61 AYQTLKLGRKDLHP 74


>Glyma05g23210.1 
          Length = 594

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 1  MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKPNEDNTKVFEKLKAS 60
          M +  P R+QR+KG  +K   ++  L+ V IWL++QL HS +K+      +   E  K +
Sbjct: 1  MFRLSPRRSQRSKGFKVKHALQLCVLLGVCIWLIYQLKHSNEKK------SSYVESTKTT 54

Query: 61 HESKKLGRKWFQP 73
           E  K GRK   P
Sbjct: 55 SEVVKFGRKDLHP 67


>Glyma17g16850.1 
          Length = 638

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 1  MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKPNEDNTKVFEKLKAS 60
          M +  P R+QR+KG  +K   ++  L+ V IWL++QL HS +K+      +   E  K +
Sbjct: 1  MFRLSPRRSQRSKGFKVKHALQLCVLLGVCIWLVYQLKHSKEKK------SSYVESTKTT 54

Query: 61 HESKKLGRKWFQPWI 75
           E  K GRK   P +
Sbjct: 55 SEVVKFGRKDLHPRV 69


>Glyma20g27370.1 
          Length = 529

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 13/79 (16%)

Query: 1  MLKQLPNRNQRTKGSMIKQGFKIFTLIAVIIWLLFQLNHSLDKRKPNEDNTKVF---EKL 57
          M+K+ P+RN R+KG  +K   +I  L+ V  WL++Q+ H+ DK+         F    KL
Sbjct: 1  MIKRFPSRNNRSKGIKVKHVLQIVLLLGVCFWLIYQVKHNHDKKNE-------FAKDAKL 53

Query: 58 KASHESK---KLGRKWFQP 73
            S ++    KLGR+   P
Sbjct: 54 SVSTQTDPILKLGRRDLHP 72