Miyakogusa Predicted Gene
- Lj1g3v2038790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2038790.1 tr|G7ZWL9|G7ZWL9_MEDTR C-myb-like transcription
factor OS=Medicago truncatula GN=MTR_042s0013 PE=4
S,76.56,2e-18,Myb_DNA-binding,SANT/Myb domain; no
description,Homeodomain-like; HTH_MYB,Myb domain;
Homeodomain-li,CUFF.28605.1
(68 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g26240.1 111 2e-25
Glyma04g08550.1 106 7e-24
Glyma06g08660.1 83 5e-17
Glyma18g39740.1 57 5e-09
Glyma07g15820.2 56 9e-09
Glyma07g15820.3 55 1e-08
Glyma03g19470.1 50 5e-07
>Glyma17g26240.1
Length = 925
Score = 111 bits (277), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/64 (79%), Positives = 55/64 (85%)
Query: 1 MEGERLTPAPSEGTVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNW 60
M+GE+ APS G VDG QK+RALHGRTTGPTRRSTKGQWTPEED+ LRNAV RFKGKNW
Sbjct: 1 MDGEQSMAAPSHGQVDGAQKVRALHGRTTGPTRRSTKGQWTPEEDDTLRNAVERFKGKNW 60
Query: 61 KKIG 64
KKI
Sbjct: 61 KKIA 64
>Glyma04g08550.1
Length = 998
Score = 106 bits (264), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 1 MEGERLTPAPSEGTVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNW 60
MEG++ A SEG ++GVQKIR+L+GRTTGPTRRSTKGQWTPEEDEILR AV RFKGKNW
Sbjct: 1 MEGDQTILAASEGVIEGVQKIRSLNGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNW 60
Query: 61 KKIG 64
KKI
Sbjct: 61 KKIA 64
>Glyma06g08660.1
Length = 980
Score = 83.2 bits (204), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/68 (63%), Positives = 50/68 (73%), Gaps = 5/68 (7%)
Query: 1 MEGERLTPAPSEGTVDG----VQKIRALHGRTTGPTRRSTKGQWTPEEDEILRNAVHRFK 56
MEG++ PA S+ ++ VQ + + RTTGPTRRSTKGQWTPEEDEILR AV RFK
Sbjct: 1 MEGDQTIPAASDVVIEACFSLVQHL-TIDMRTTGPTRRSTKGQWTPEEDEILRKAVQRFK 59
Query: 57 GKNWKKIG 64
GKNWKKI
Sbjct: 60 GKNWKKIA 67
>Glyma18g39740.1
Length = 521
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 39/63 (61%), Gaps = 10/63 (15%)
Query: 11 SEGTVDGVQKIRAL---------HGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWK 61
SEG+ + K A+ H RTTGP RR+ KG WT +EDE LRNAV FKGK+WK
Sbjct: 26 SEGSGSAIHKSPAICSPASTSPSHRRTTGPIRRA-KGGWTAQEDETLRNAVAVFKGKSWK 84
Query: 62 KIG 64
KI
Sbjct: 85 KIA 87
>Glyma07g15820.2
Length = 153
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 25 HGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
H RTTGP RR+ KG WT +EDE LRNAV FKGK+WKKI
Sbjct: 49 HRRTTGPIRRA-KGGWTAQEDETLRNAVAVFKGKSWKKIA 87
>Glyma07g15820.3
Length = 200
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
Query: 25 HGRTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
H RTTGP RR+ KG WT +EDE LRNAV FKGK+WKKI
Sbjct: 49 HRRTTGPIRRA-KGGWTAQEDETLRNAVAVFKGKSWKKIA 87
>Glyma03g19470.1
Length = 441
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 27 RTTGPTRRSTKGQWTPEEDEILRNAVHRFKGKNWKKIG 64
RTTGP RR+ +G WT E+D+ L NAV F GKNWKKI
Sbjct: 1 RTTGPVRRA-RGGWTEEDDDTLTNAVQVFNGKNWKKIA 37