Miyakogusa Predicted Gene

Lj1g3v2036590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2036590.1 tr|A9T5D1|A9T5D1_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,48.94,2e-16,"Winged helix" DNA-binding domain,NULL;
La,RNA-binding protein Lupus La; no description,Winged
helix,gene.Ljchr1_pseudomol_20120830.path1.gene4765.1
         (98 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g08650.2                                                       151   1e-37
Glyma06g08650.1                                                       151   1e-37
Glyma04g08540.1                                                       150   3e-37
Glyma17g25990.1                                                       148   1e-36

>Glyma06g08650.2 
          Length = 363

 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 84/94 (89%), Gaps = 1/94 (1%)

Query: 1   MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
           MR +++ESEDGM+SLAL+CSFNRMR+HLNLGDVK E+V +DTV AVA  LRNSA+LKVSE
Sbjct: 33  MRNSITESEDGMISLALICSFNRMRKHLNLGDVKPEEVAQDTVNAVAQTLRNSATLKVSE 92

Query: 61  DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 94
           DGKKVGR TELPK EEV EQV+IRT+A SPF++D
Sbjct: 93  DGKKVGRKTELPKLEEV-EQVEIRTLAVSPFEHD 125


>Glyma06g08650.1 
          Length = 460

 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 84/94 (89%), Gaps = 1/94 (1%)

Query: 1   MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
           MR +++ESEDGM+SLAL+CSFNRMR+HLNLGDVK E+V +DTV AVA  LRNSA+LKVSE
Sbjct: 33  MRNSITESEDGMISLALICSFNRMRKHLNLGDVKPEEVAQDTVNAVAQTLRNSATLKVSE 92

Query: 61  DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 94
           DGKKVGR TELPK EEV EQV+IRT+A SPF++D
Sbjct: 93  DGKKVGRKTELPKLEEV-EQVEIRTLAVSPFEHD 125


>Glyma04g08540.1 
          Length = 488

 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 84/94 (89%), Gaps = 1/94 (1%)

Query: 1   MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
           MRK+++ESEDGM+SLAL+CSFNRMR+HLNLGDVK ++V ++TV  VA  LRNSASLKVSE
Sbjct: 33  MRKSITESEDGMISLALICSFNRMRKHLNLGDVKPDEVAQETVNTVAQTLRNSASLKVSE 92

Query: 61  DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 94
           DGKKVGR TELPK E+V EQV+IRT+A SPF+YD
Sbjct: 93  DGKKVGRKTELPKLEDV-EQVEIRTLAVSPFEYD 125


>Glyma17g25990.1 
          Length = 406

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 83/94 (88%)

Query: 1   MRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVAHVLRNSASLKVSE 60
           +RKTV+ESEDGMVSLAL+CSFNRMR +LNLGDVK + VT+DTVKAVA  L+NSA ++VSE
Sbjct: 33  LRKTVTESEDGMVSLALICSFNRMRTNLNLGDVKLDGVTKDTVKAVAQALKNSALVRVSE 92

Query: 61  DGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYD 94
           DG KVGR TEL K EEVIEQV+IRTIAA PF+YD
Sbjct: 93  DGTKVGRATELLKPEEVIEQVEIRTIAALPFEYD 126