Miyakogusa Predicted Gene

Lj1g3v1965120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1965120.1 tr|G7JCC2|G7JCC2_MEDTR Cryptochrome DASH
OS=Medicago truncatula GN=MTR_3g108710 PE=4
SV=1,67.95,0,CRYPTOCHROME,NULL; DNA_photolyase,DNA photolyase,
N-terminal; no description,Rossmann-like alpha/bet,CUFF.28199.1
         (266 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g07870.2                                                       331   5e-91
Glyma04g07870.1                                                       330   7e-91
Glyma02g02110.1                                                       141   8e-34
Glyma10g02240.1                                                       140   2e-33
Glyma10g02240.2                                                       139   2e-33
Glyma11g25260.1                                                        80   2e-15
Glyma02g29520.1                                                        77   1e-14
Glyma09g36480.2                                                        69   6e-12
Glyma09g36480.1                                                        68   9e-12
Glyma03g22850.1                                                        68   1e-11
Glyma19g27170.1                                                        67   3e-11
Glyma08g22400.1                                                        55   6e-08

>Glyma04g07870.2 
          Length = 461

 Score =  331 bits (849), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 181/217 (83%), Gaps = 12/217 (5%)

Query: 45  SSSEPV---------TLHQVPEQDANNN---IIDQTFRKYTSNNAKRRGKGTAIVWLRND 92
           + SEPV         T  QVPEQDANN+   + D TFR+YTSN  K  GKGTAIVW RND
Sbjct: 5   AKSEPVSSSASSSSSTYQQVPEQDANNDLDRVADNTFRRYTSNVTKGSGKGTAIVWFRND 64

Query: 93  LRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLADLRDNL 152
           LRVLDNE LYKAW+SSET+LPVYCVDPRLFATTYHFGF KTGALRAQFL+ECLADLR NL
Sbjct: 65  LRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNL 124

Query: 153 MKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQ 212
           MKRG+NLL++HGKPE++LPSLAK+F AHTVYAQKETCSEELNVE  V++GL+QVV  PE+
Sbjct: 125 MKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKETCSEELNVERLVMRGLKQVVTSPEE 184

Query: 213 SAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDV 249
           S+G+  S+N PKLQ +WGTTMYHLDDLPFDA  LPD+
Sbjct: 185 SSGITVSNNIPKLQLVWGTTMYHLDDLPFDATSLPDL 221


>Glyma04g07870.1 
          Length = 542

 Score =  330 bits (847), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 181/217 (83%), Gaps = 12/217 (5%)

Query: 45  SSSEPV---------TLHQVPEQDANNN---IIDQTFRKYTSNNAKRRGKGTAIVWLRND 92
           + SEPV         T  QVPEQDANN+   + D TFR+YTSN  K  GKGTAIVW RND
Sbjct: 5   AKSEPVSSSASSSSSTYQQVPEQDANNDLDRVADNTFRRYTSNVTKGSGKGTAIVWFRND 64

Query: 93  LRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLADLRDNL 152
           LRVLDNE LYKAW+SSET+LPVYCVDPRLFATTYHFGF KTGALRAQFL+ECLADLR NL
Sbjct: 65  LRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNL 124

Query: 153 MKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVVIPPEQ 212
           MKRG+NLL++HGKPE++LPSLAK+F AHTVYAQKETCSEELNVE  V++GL+QVV  PE+
Sbjct: 125 MKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKETCSEELNVERLVMRGLKQVVTSPEE 184

Query: 213 SAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDV 249
           S+G+  S+N PKLQ +WGTTMYHLDDLPFDA  LPD+
Sbjct: 185 SSGITVSNNIPKLQLVWGTTMYHLDDLPFDATSLPDL 221


>Glyma02g02110.1 
          Length = 428

 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 16/167 (9%)

Query: 88  WLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLAD 147
           W RNDLR+LDNE L  A   S ++LPVYC DP  +  +   GF KTG  RA FLI+ ++D
Sbjct: 94  WFRNDLRLLDNECLTAANNESLSVLPVYCFDPADYGKSAS-GFDKTGPYRAAFLIDSVSD 152

Query: 148 LRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVV 207
           LR NL  RG +L++R GKPE VL  LAKA GA  VYA +E   +E   E  V   +++  
Sbjct: 153 LRRNLQARGSDLVVRVGKPEAVLVELAKAVGADAVYAHREVSHDEAKAEERVEAAMKEEN 212

Query: 208 IPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFR 254
           +               ++++ WG+T+YH+DDLPF    +P  Y  FR
Sbjct: 213 V---------------EVKYFWGSTLYHVDDLPFQLEDMPSNYGGFR 244


>Glyma10g02240.1 
          Length = 440

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 16/167 (9%)

Query: 88  WLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLAD 147
           W RNDLR+LDNE L  A   S ++LPVYC DP  +  +   GF KTG  RA FLI+ ++D
Sbjct: 106 WFRNDLRLLDNECLTAANNDSLSVLPVYCFDPSDYGKSAS-GFDKTGPYRAAFLIDSVSD 164

Query: 148 LRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVV 207
           LR +L  RG +L++R GKPE VL  LAKA GA  VYA +E   +E   E  V   +++  
Sbjct: 165 LRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKEEN 224

Query: 208 IPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFR 254
           +               ++++ WG+T+YH+DDLPF    +P  Y  FR
Sbjct: 225 V---------------EVKYFWGSTLYHVDDLPFQLEDMPSNYGGFR 256


>Glyma10g02240.2 
          Length = 325

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 16/167 (9%)

Query: 88  WLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIECLAD 147
           W RNDLR+LDNE L  A   S ++LPVYC DP  +  +   GF KTG  RA FLI+ ++D
Sbjct: 106 WFRNDLRLLDNECLTAANNDSLSVLPVYCFDPSDYGKSAS-GFDKTGPYRAAFLIDSVSD 164

Query: 148 LRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSVIKGLQQVV 207
           LR +L  RG +L++R GKPE VL  LAKA GA  VYA +E   +E   E  V   +++  
Sbjct: 165 LRRSLQARGSDLVVRVGKPETVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKEEN 224

Query: 208 IPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFR 254
           +               ++++ WG+T+YH+DDLPF    +P  Y  FR
Sbjct: 225 V---------------EVKYFWGSTLYHVDDLPFQLEDMPSNYGGFR 256


>Glyma11g25260.1 
          Length = 225

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 57/93 (61%), Gaps = 1/93 (1%)

Query: 85  AIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIEC 144
           A+VW  NDLR+LDNE L  A   S ++LPVYC DP  +  +   GF KT   R  FLI+ 
Sbjct: 96  ALVWFCNDLRLLDNECLTAANNDSLSVLPVYCFDPFDYGKSTS-GFDKTDPYRTAFLIDS 154

Query: 145 LADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAF 177
           ++DL  +L     NL++R GKP+ VL  LAKA 
Sbjct: 155 ISDLHRSLQACDSNLVVRVGKPKTVLVELAKAL 187


>Glyma02g29520.1 
          Length = 228

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 82  KGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFL 141
           +  A++W  NDLR+LDNE L      S ++LP+Y  DP  +  +    F KTG  RA FL
Sbjct: 92  RRAALIWFCNDLRLLDNECLTATNNDSLSVLPIYFFDPSDYGKSAS-DFDKTGPYRAAFL 150

Query: 142 IECLADLRDNLMKRGVNLLIRHGKPEDVLPSLAK 175
           I+ ++DLR +L  R  +L++R  KPE VL  LAK
Sbjct: 151 IDSVSDLRRSLQARNSDLIVRVKKPETVLVELAK 184


>Glyma09g36480.2 
          Length = 530

 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 24/176 (13%)

Query: 80  RGKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQ 139
           +  GTAI+W ++DLR  D+  L  A  +  +L+P+Y  D R+ +        +      +
Sbjct: 2   KATGTAILWFKHDLRTDDHPALLAA-SAFPSLVPIYVFDHRILS--------RFSDETLE 52

Query: 140 FLIECLADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSV 199
            ++  + DLR +L  RG +L+IR G  E+V+  LA    A  V+A++E   E   +   V
Sbjct: 53  LVLLAVEDLRKSLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVV 112

Query: 200 IKGLQQVVIPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFRK 255
            + L+ V +P             P+++ +W T  Y + DL      LP  Y +F+K
Sbjct: 113 KQRLKSVSVP----------QGSPRIE-LWRTPFYDIKDLE----NLPASYDEFKK 153


>Glyma09g36480.1 
          Length = 625

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 24/176 (13%)

Query: 80  RGKGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQ 139
           +  GTAI+W ++DLR  D+  L  A  +  +L+P+Y  D R+ +        +      +
Sbjct: 2   KATGTAILWFKHDLRTDDHPALLAA-SAFPSLVPIYVFDHRILS--------RFSDETLE 52

Query: 140 FLIECLADLRDNLMKRGVNLLIRHGKPEDVLPSLAKAFGAHTVYAQKETCSEELNVESSV 199
            ++  + DLR +L  RG +L+IR G  E+V+  LA    A  V+A++E   E   +   V
Sbjct: 53  LVLLAVEDLRKSLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVV 112

Query: 200 IKGLQQVVIPPEQSAGLINSSNHPKLQFIWGTTMYHLDDLPFDAACLPDVYTQFRK 255
            + L+ V +P             P+++ +W T  Y + DL      LP  Y +F+K
Sbjct: 113 KQRLKSVSVP----------QGSPRIE-LWRTPFYDIKDLE----NLPASYDEFKK 153


>Glyma03g22850.1 
          Length = 94

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 85  AIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFLIEC 144
           A+VW  NDLR+LDNE L  A   S  +L VYC DP  ++ +    F KTG  RA FLI  
Sbjct: 12  ALVWFCNDLRLLDNERLTVANNDSLFVLRVYCFDPSNYSKSAP-DFDKTGPYRAAFLIHS 70

Query: 145 LADLRDNLMKRGVNLLIRHGKPE 167
           ++DLR +L   G +L++   KPE
Sbjct: 71  VSDLRRSLQTHGSDLVVHVKKPE 93


>Glyma19g27170.1 
          Length = 159

 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 82  KGTAIVWLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFATTYHFGFQKTGALRAQFL 141
           +  A+VW  N+L +L+N+ L  A   S ++LP++C D             K G  RA FL
Sbjct: 78  RRAALVWFHNNLGLLNNQCLTVANNDSLSVLPIFCFD-------------KIGPYRAAFL 124

Query: 142 IECLADLRDNLMKRGVNLLIRHGKPEDVLPSLAK 175
           I+ ++DLR NL  RG +L++R  K E VL  LAK
Sbjct: 125 IDSISDLRRNLQARGFDLVVRVRKLETVLAKLAK 158


>Glyma08g22400.1 
          Length = 545

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 88  WLRNDLRVLDNETLYKAWVSSETLLPVYCVDPRLFA---TTYHFGFQKTGALRAQFLIEC 144
           W R  LR+ DN  L  A   +  L PV+ +DP        +   G  + G  R +FL+EC
Sbjct: 21  WFRKGLRIHDNPALEVASRGASHLYPVFVIDPHFMEPDPNSSAPGSSRAGLNRIKFLLEC 80

Query: 145 LADLRDNLMKRGVNLLIRHGKPEDVL 170
           L DL  NL   G  LLI  G P +V+
Sbjct: 81  LVDLDLNLKNLGSRLLILKGDPAEVV 106