Miyakogusa Predicted Gene

Lj1g3v1931370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1931370.1 tr|G7JBQ4|G7JBQ4_MEDTR Transcription elongation
factor A protein OS=Medicago truncatula
GN=MTR_3g108,68.35,0,TFIIS_CENTRAL,Transcription elongation factor
S-II, central domain; TFIIS_M,Transcription elongation,CUFF.28179.1
         (1144 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g07700.1                                                      1314   0.0  
Glyma04g07580.1                                                      1097   0.0  
Glyma04g40150.1                                                        67   2e-10
Glyma06g14690.1                                                        65   4e-10

>Glyma06g07700.1 
          Length = 1049

 Score = 1314 bits (3401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/1173 (62%), Positives = 819/1173 (69%), Gaps = 153/1173 (13%)

Query: 1    MSNNLVSQPMPSMPMAQLEPILNKVDSSGRQMELGILGGPVSTDPMSRPPGASNDHAGL- 59
            MSNNLVS+P+PSM MAQLEP++NKVDSSGRQ+E+G+LG PVS+D +++  G SN+H GL 
Sbjct: 1    MSNNLVSEPIPSMQMAQLEPLMNKVDSSGRQIEMGLLG-PVSSDIVAQSQGTSNEHVGLL 59

Query: 60   -------SSGRVEXXXXXXXXXXXXXSHRGLHQLHLPSRQSVQVG------AQQLSATTP 106
                    S  +              S+ G+HQ+   ++QS+Q+G        Q   TTP
Sbjct: 60   RAVPGEPMSQGLPLLSMHSERVEVQASNPGMHQILSANKQSMQMGMLLKSSGPQQQTTTP 119

Query: 107  KRKAPMELSPSGSVVSNKRVAQMGPRPWLQQGSNASNRGSSQMQSPSNGSRPQQHSGASS 166
            KRKAPMELS   S+  NKRVA MG RPWLQQ  NASN+GS QMQSPSN SR  QH  ASS
Sbjct: 120  KRKAPMELS--SSISFNKRVAAMGNRPWLQQVPNASNKGSLQMQSPSNASR-TQHLAASS 176

Query: 167  KRKTQMMDSTSGKAGTPRSSNSKNQNTQLKQSPRAQSESSESVRSKMRESXXXXXXXVSQ 226
            KRKTQ+ D+T  K+GTPR+ +SK+QNTQ+KQS + Q+ESS+SVRSKMRES       VSQ
Sbjct: 177  KRKTQL-DNTPSKSGTPRAMSSKSQNTQMKQSSKVQTESSDSVRSKMRESLAAALALVSQ 235

Query: 227  QEKPLASSENTPNSDGNAQGKLEDSSDCAGSASAPVVTASEQRQEISQSANSSFSATVSV 286
            Q KP   + NTPN   N + KLE+SS CAGSA A +  + EQRQ+ISQS           
Sbjct: 236  QGKPQPPNNNTPNDAANTRVKLENSSQCAGSAPASIDASLEQRQDISQS----------- 284

Query: 287  DHEMGEQGKNTASHEDLSEKCKDYEVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTD 346
                                  D+E GST+ S+NENILSSM VLNCDK DFQSSYTLTTD
Sbjct: 285  ----------------------DFEAGSTNASDNENILSSMHVLNCDKQDFQSSYTLTTD 322

Query: 347  DVPFSDSFFMKDDLLQGNGLSWVLSDMVEVDLGNQREGQTNIELRSEPDETGGASKEATP 406
            DVPFSD FFMKDDLLQGNGLSWVLSDMV  D+GNQRE                + +E  P
Sbjct: 323  DVPFSDGFFMKDDLLQGNGLSWVLSDMV--DVGNQRE----------------SCREEVP 364

Query: 407  LPELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSM 466
            LPELLAS+IEAELFKLF GVNKKYKEKGRSLLFNLKDRNNPELRERVMFG+IPPEQLCSM
Sbjct: 365  LPELLASRIEAELFKLFQGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGKIPPEQLCSM 424

Query: 467  TAEELASKELSQWRIAKAEEFDKMVVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEE 526
            TAEELASKELSQWRIAKAEE  +MVVLPDSD DFRRLVKKTHKGEFQVEV+HEDNVPVEE
Sbjct: 425  TAEELASKELSQWRIAKAEELAQMVVLPDSDGDFRRLVKKTHKGEFQVEVEHEDNVPVEE 484

Query: 527  VSGGTASAVRSQTTKKVVEATSPSRADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDP 586
            VSG                  SPS     K DV T  EK NLQKD++FSIT+SSNDG DP
Sbjct: 485  VSGDA----------------SPS-----KPDVKTDAEKGNLQKDDTFSITISSNDGADP 523

Query: 587  MQGLMTDDALKDPDFLPPIVSLDEFMESLDTEPPFENLPVESGKVTPIXXXXXXXXXXXX 646
            MQGL+TDDALKD DFL PIVSLD+FM SL   PPFENLPVESGKV P             
Sbjct: 524  MQGLITDDALKDSDFLEPIVSLDDFMYSLTYAPPFENLPVESGKVVPTSDKDDSGVGTKS 583

Query: 647  XXXXLTPSEKADVTTD-KSEKFQSTRVNSDVEEEKKVNAESG---DSLSNGKNQADMKPT 702
                LTP+E+AD+T D KSEKFQST VNSD  +EKKVNAESG     +    +QADMK T
Sbjct: 584  KPADLTPNEQADITGDNKSEKFQSTHVNSDSLKEKKVNAESGAISSDVGYSGSQADMKST 643

Query: 703  DDHAKERSTDDMKSASNDAVVRPSQLHAEQKFGNDNVYSKTAVLIKGECLWEGMLQLNIS 762
            D   KER                              YSK A+  KGECLWEGMLQ NIS
Sbjct: 644  DGRTKER------------------------------YSKDAIPTKGECLWEGMLQPNIS 673

Query: 763  TTHSVISIFKSGEKTSTKDWPGFLDIKGRVRLEPFEKFLQELPQSRTRAIMVLHFVSKGS 822
            +THSVISIFKSGEKT+ KDWPGFL+IKGRVRL+ FEKFLQ+L QSR+RAIMV HFVSK S
Sbjct: 674  STHSVISIFKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRQSRSRAIMVSHFVSKES 733

Query: 823  SPEEQSTIKEVAESYITDERVGFAEPVNGVELYFCPPHKKTVEMLGKILPKEQIEAVNSI 882
              ++QST++EVA+SYI DERVGFAEPV GVELYFCPPHKKTVEML  ILPKEQIE VNSI
Sbjct: 734  --DDQSTLREVADSYILDERVGFAEPVPGVELYFCPPHKKTVEMLSNILPKEQIEPVNSI 791

Query: 883  DNGLIGVVVWRKTNLTSTISPT----HKHSSKRQSSFNRRQQDTNVNANNTHKAVPSKGI 938
            DNGLIG++VWRKTNLTS+ISPT    HKHSSKRQ  F+RRQQD NVNAN+THKAVPS G+
Sbjct: 792  DNGLIGIIVWRKTNLTSSISPTTASHHKHSSKRQY-FSRRQQDINVNANSTHKAVPSMGV 850

Query: 939  KAAENXXXXXXXXXXXXXXXXXXXXXTTRVEDDLPEFNFSRSSNPPPHLVQKPLGP-GMV 997
            K  EN                       RVEDDLPEFNFS SSNP  HL QK +GP  MV
Sbjct: 851  KTTENDDDDVPPGFGPP---------AARVEDDLPEFNFSGSSNPS-HLGQKSMGPPNMV 900

Query: 998  PFHSVSKTPSRPAEQMRELVLKYGQNQANVSSVNWQDKFGGTIQPWNDDDDDIPEWQPQS 1057
            P HS +  P RPAEQMRELV KYGQN+ NV SVNWQDKFGGTIQPWNDDDDDIPEWQPQ+
Sbjct: 901  PLHSANPAPPRPAEQMRELVHKYGQNKPNVPSVNWQDKFGGTIQPWNDDDDDIPEWQPQN 960

Query: 1058 SLNQFPPQQTMRNSHLRPHTQNQPFVGSP----MAAQYLQQAPMNVNHVQSNLNPQWVPR 1113
            S NQFPPQQTM N HLRPH  NQ F GS     M  QYL Q PMNV H Q N +PQWVP 
Sbjct: 961  SQNQFPPQQTMHNFHLRPHILNQSFPGSQQQPIMTPQYL-QPPMNVTHGQRNFDPQWVPS 1019

Query: 1114 SQGDNTQPSGG--YGAPAQGTGWSQHVSRSRRF 1144
             QG N QP GG  Y   AQGT W Q  SRSR +
Sbjct: 1020 PQGSNLQPGGGPPY---AQGTTWPQDASRSRGY 1049


>Glyma04g07580.1 
          Length = 970

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1157 (55%), Positives = 741/1157 (64%), Gaps = 212/1157 (18%)

Query: 13   MPMAQLEPILNKVDSSGRQMELGILGGPVSTDPM-SRPPGASNDHAGLSSGRVEXXXXXX 71
            M MAQLEP++NKVDSSGRQ+E+G+LG PVS+D + S+  G SN+H GL            
Sbjct: 1    MQMAQLEPLMNKVDSSGRQVEMGLLG-PVSSDVIVSQSQGTSNEHVGL-----------L 48

Query: 72   XXXXXXXSHRGLHQLHLPSRQSVQV-------GAQQLSATTPKRKAPMELSPSGSVVSNK 124
                   S+ G+HQ+   ++ S+ +       G QQ   TTPKRKAPMEL  S S   NK
Sbjct: 49   RAVPGEASNPGMHQILSANKHSMLMDILPNSSGPQQ-QPTTPKRKAPMELLSSSSF--NK 105

Query: 125  RVAQMGPRPWLQQGSNASNRGSSQMQSPSNGSRP--QQHSGASSKRKTQMMDSTSGKAGT 182
            RVAQM                         GSRP  QQ    S+K   QM          
Sbjct: 106  RVAQM-------------------------GSRPWLQQVPNVSNKGSLQM---------- 130

Query: 183  PRSSNSKNQNTQLKQSPRAQSESSESVRSKMRESXXXXXXXVSQQEKPLASSENTPNSDG 242
                          QSP   S +     S  R++                  +NTP+  G
Sbjct: 131  --------------QSPSHASRTQHLAASSKRKTQL----------------DNTPSKSG 160

Query: 243  NAQGKLEDSSDCAGSASAPVVTASEQRQEISQSANSSFSATVSVDHEMGEQGKNTASHED 302
              +                 +++  Q  ++ QS+     ++ SV  +M E   +      
Sbjct: 161  TPRS----------------MSSKSQNTQMKQSSKVQTESSDSVRSKMRESLASA----- 199

Query: 303  LSEKCKDYEVGSTSVSNNENILSSMEVLNCDKPDFQSSYTLTTDDVPFSDSFFMKDDLLQ 362
            L+  C+    G T+ SNNE+ILSSM VLN DK DFQSSY LTTD V FSD FFMKDDLLQ
Sbjct: 200  LALVCQQ---GPTNTSNNESILSSMHVLNRDKQDFQSSYFLTTDAVSFSDGFFMKDDLLQ 256

Query: 363  GNGLSWVLSDMVEVDLGNQREGQTNIELRSEPDETGGASKEATPLPELLASQIEAELFKL 422
            GNGLSWVLSDMV  D+GNQRE                + +   PLP+LLAS+IEAELFKL
Sbjct: 257  GNGLSWVLSDMV--DVGNQRE----------------SCRVEVPLPKLLASRIEAELFKL 298

Query: 423  FGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIA 482
            FGGVNKKYKEKGRSLLFNLKD NNPELRERVMFG+IPPEQLCSMTAEELASKELSQWRIA
Sbjct: 299  FGGVNKKYKEKGRSLLFNLKDHNNPELRERVMFGKIPPEQLCSMTAEELASKELSQWRIA 358

Query: 483  KAEEFDKMVVLPDSDVDFRRLVKKTHKGEFQVEVDHEDNVPVEEVSGGTASAVRSQTTKK 542
            KAEE  +MVVLPDSDVDFRRLVKKTHKGEFQVEV+HEDNVPVEEVS  + S         
Sbjct: 359  KAEELAQMVVLPDSDVDFRRLVKKTHKGEFQVEVEHEDNVPVEEVSDASPS--------- 409

Query: 543  VVEATSPSRADIIKRDVNTGGEKNNLQKDNSFSITLSSNDGTDPMQGLMTDDALKDPDFL 602
                         K DVNT GEK NLQKD++FSIT+SSNDG DPMQGLMTDDALKDPDFL
Sbjct: 410  -------------KPDVNTDGEKGNLQKDDTFSITISSNDGADPMQGLMTDDALKDPDFL 456

Query: 603  PPIVSLDEFMESLDTEPPFENLPVESGKVTPIXXXXXXXXXXXXXXXXLTPSEKADVTTD 662
            PPIVSLDEFMESL +EPPFENLPVESGKVTP                 LTP+E+ADV  D
Sbjct: 457  PPIVSLDEFMESLHSEPPFENLPVESGKVTPTSDKDDSGVGSKSKSADLTPNEQADVNAD 516

Query: 663  -KSEKFQSTRVNSDVEEEKKVNAESGDSLSNG---KNQADMKPTDDHAKERSTDDMKSAS 718
             KSEKFQSTRVNSD E+EKK+NAESG   S+     +QADMK TD H KERSTDD+KSAS
Sbjct: 517  NKSEKFQSTRVNSDAEKEKKINAESGAISSDAGYCGSQADMKSTDGHTKERSTDDVKSAS 576

Query: 719  NDAVVRPSQLHAEQKFGNDNVYSKTAVLIKGECLWEGMLQLNISTTHSVISIFKSGEKTS 778
            +DA +R +Q H E+++GN+N YSK AVL KGECLWEGMLQ NIS+THSV+SIFKSGEKT+
Sbjct: 577  SDAELRGNQFHLEERYGNNNRYSKDAVLTKGECLWEGMLQPNISSTHSVVSIFKSGEKTA 636

Query: 779  TKDWPGFLDIKGRVRLEPFEKFLQELPQSRTRAIMVLHFVSKGSSPEEQSTIKEVAESYI 838
             +DWPGFL+IKGRVR + FEKFLQ+L QSR+RAIMV HFVSK S  ++QST+ EVA+SY+
Sbjct: 637  AEDWPGFLEIKGRVRCDAFEKFLQDLRQSRSRAIMVSHFVSKES--DDQSTLSEVADSYV 694

Query: 839  TDERVGFAEPVNGVELYFCPPHKKTVEMLGKILPKEQIEAVNSIDNGLIGVVVWRKTNLT 898
             DERVGFAEP  GVELYFCPPH KTVEML  I+PKEQIE VNSIDNGLIG++VWRKTNLT
Sbjct: 695  LDERVGFAEPAPGVELYFCPPHNKTVEMLCNIIPKEQIEEVNSIDNGLIGIIVWRKTNLT 754

Query: 899  STISPT----HKHSSKRQSSFNRRQQDTNVNANNTHKAVPSKGIKAAENXXXXXXXXXXX 954
            S+ISPT    HKHSSKRQ  F+RRQQD N+NAN+T KAVPS G+K  EN           
Sbjct: 755  SSISPTTESHHKHSSKRQ-YFSRRQQDINMNANSTLKAVPSMGVKMTEN---------DD 804

Query: 955  XXXXXXXXXXTTRVEDDLPEFNFSRSSNPPPHLVQKPLG-PGMVPFHSVSKTPSRPAEQM 1013
                        +VEDDL EF+F  +   P HL QKP+G   +VP H V+  P  PAEQM
Sbjct: 805  DDVPPGFGPPVAQVEDDLSEFSFCSN---PSHLGQKPMGSSNVVPLHPVNPAPPCPAEQM 861

Query: 1014 RELVLKYGQNQANVSSVNWQDKFGGTIQPWNDDDDDIPEWQPQSSLNQFPPQQTMRNSHL 1073
            RELV KYGQN+ NV S+NWQDKFGGTIQPWNDDDDDIPEWQPQ+S NQ            
Sbjct: 862  RELVHKYGQNKPNVPSINWQDKFGGTIQPWNDDDDDIPEWQPQNSQNQ------------ 909

Query: 1074 RPHTQNQPFVGSP----MAAQYLQQAPMNVNHVQSNLNPQWVPRSQGDNTQPSGG--YGA 1127
             PH  NQ F GS     M  QYL Q PMN            VP  QG N QP GG  Y  
Sbjct: 910  -PHILNQSFPGSQQQPIMTPQYL-QPPMN-----------GVPSPQGSNLQPRGGPPY-- 954

Query: 1128 PAQGTGWSQHVSRSRRF 1144
             AQGT W QH S S  +
Sbjct: 955  -AQGTTWPQHASSSTGY 970


>Glyma04g40150.1 
          Length = 400

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 47/71 (66%)

Query: 408 PELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMT 467
           P  +A  +E+ LF+ +G  N   K K RSL+FNLKD NNP+ R +V+ G I PEQL +M+
Sbjct: 264 PIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVIEPEQLINMS 323

Query: 468 AEELASKELSQ 478
             E+AS++  Q
Sbjct: 324 TAEMASEQRKQ 334


>Glyma06g14690.1 
          Length = 367

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%)

Query: 408 PELLASQIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMT 467
           P  +A  +E+ LF+ +G  N   K K RSL+FNLKD NNP+ R +V+ G + PEQL +M+
Sbjct: 231 PIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMS 290

Query: 468 AEELASKELSQ 478
             E+AS++  Q
Sbjct: 291 TAEMASEQRKQ 301