Miyakogusa Predicted Gene

Lj1g3v1857400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1857400.1 Non Chatacterized Hit- tr|A3BKR7|A3BKR7_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,43.06,0.0000008,seg,NULL; no description,Armadillo-like
helical,CUFF.28086.1
         (179 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g06940.1                                                       182   1e-46

>Glyma04g06940.1 
          Length = 300

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 118/179 (65%), Gaps = 18/179 (10%)

Query: 1   MGPTIKALIAMASTCSVQVLTSLVRFIRSPLVDEILSHGEIPTIVGFLRLQDLSLCAAAL 60
           MGPTIKALIAMAS CSV+VL+SL+RFIRSPLVDEIL  GEIP IVGFLR +DL L  AAL
Sbjct: 140 MGPTIKALIAMASGCSVRVLSSLIRFIRSPLVDEILCSGEIPKIVGFLRSRDLGLRVAAL 199

Query: 61  DCVMEIAYIGRMEVVEAMFQENLVKILMELQRKGSESGDSSYDVEENRGREKYEGVEEFD 120
           DCV+E+ YIGR EVVEAM +  LV+ILM+LQR   E G    D                D
Sbjct: 200 DCVLELGYIGRREVVEAMLKIGLVEILMDLQR---EEGCCESDC---------------D 241

Query: 121 AVFAGCVSRFAIQLEVGEGXXXXXXXXXXXXXXXXXXXASQSDAECATVSAEILWGSTP 179
             F  CVSRFAIQ+EVGEG                   AS+S+AE ATVSAEILWGS+P
Sbjct: 242 FAFECCVSRFAIQVEVGEGLSGEEKREVKSEILRIVKEASKSEAEFATVSAEILWGSSP 300