Miyakogusa Predicted Gene

Lj1g3v1798720.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1798720.3 tr|A5AU42|A5AU42_VITVI Glutamate receptor
OS=Vitis vinifera GN=VITISV_040422 PE=3 SV=1,55.43,4e-19,no
description,NULL; GLUTAMATE RECEPTOR 2 PLANT,NULL; IONOTROPIC
GLUTAMATE RECEPTOR,NULL; Periplasmi,CUFF.27959.3
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g35300.1                                                        87   4e-18
Glyma07g35290.1                                                        74   4e-14
Glyma06g34900.1                                                        51   2e-07

>Glyma07g35300.1 
          Length = 842

 Score = 87.0 bits (214), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 35  NETTVVKVGGVIDLTGMVGKMGLSCINMSLSDFYHSHSHYNTRIQFSFRDSHGDVVTAAA 94
            E   + +G V+DL   +G M  SCI M+  DFY  H HY TR+    RDS  +VVTAA+
Sbjct: 32  KEAIPIPIGIVLDLNSSIGSMSNSCIWMAYQDFYERHPHYKTRLALQTRDSRDNVVTAAS 91

Query: 95  QALELIQNEQVQAILGPVTTMEANFMIRLG 124
            A EL+ NE+V AI+GP T+ +A F+I LG
Sbjct: 92  VAQELL-NEKVHAIIGPQTSEQAWFVIELG 120


>Glyma07g35290.1 
          Length = 782

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%)

Query: 45  VIDLTGMVGKMGLSCINMSLSDFYHSHSHYNTRIQFSFRDSHGDVVTAAAQALELIQNEQ 104
           V+DL   +G M  SCI M+  DFY  H  + TR+    R+S GD V AA  A +LI  E+
Sbjct: 2   VLDLNSPIGSMANSCIWMAHHDFYKQHPRFQTRLDLRTRNSGGDTVKAAYAAFDLITKEK 61

Query: 105 VQAILGPVTTMEANFMIRLG 124
           V+AI+GP  + +A  +I LG
Sbjct: 62  VKAIIGPQKSEQARHVINLG 81


>Glyma06g34900.1 
          Length = 809

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)

Query: 35  NETTVVK--VGGVIDLTGMVGKMGLSCINMSLSDFYHSHSHYNTRIQFSFRDSHGDVVTA 92
           NE++  K  +G ++D +  +G+     + ++L DFY              R+S GD + A
Sbjct: 1   NESSDDKGIIGAILDKSSRIGQEHAVAMKLALEDFYQKSIQ---SFSLHIRNSQGDPLLA 57

Query: 93  AAQALELIQNEQVQAILGPVTTMEANFMIRL 123
           A  A +LI N++VQAI+GP T  E + +  +
Sbjct: 58  AIAAKDLIDNQKVQAIIGPQTWAETSLVAEI 88