Miyakogusa Predicted Gene
- Lj1g3v1798520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1798520.1 tr|G7J953|G7J953_MEDTR DNA cross-link repair 1A
protein OS=Medicago truncatula GN=MTR_3g105470 PE=4
,83.33,0.000000000000002,no description,Sterile alpha motif/pointed
domain; no description,NULL; DNA CROSS-LINK REPAIR
PROTEI,gene.g32083.t1.1
(621 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g06090.1 704 0.0
Glyma09g25430.1 395 e-110
Glyma16g05020.2 177 4e-44
Glyma16g05020.1 177 4e-44
Glyma04g06090.1 124 5e-28
Glyma12g11250.1 103 7e-22
Glyma12g23050.1 97 6e-20
Glyma06g15880.1 64 4e-10
Glyma05g38440.1 55 3e-07
Glyma06g17430.1 54 7e-07
Glyma03g09660.1 51 4e-06
Glyma04g37670.1 51 4e-06
Glyma18g51850.1 51 4e-06
Glyma08g28950.1 50 7e-06
>Glyma06g06090.1
Length = 641
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/524 (67%), Positives = 396/524 (75%), Gaps = 28/524 (5%)
Query: 79 LDFIPSTIDSVGTALTDXXXXXXXXXXXXXXXXXPVKVKMKGTAYFGNSIESKLVVSRAN 138
LDFIPSTI V +A + ++K KG Y NSIESKLVVSRAN
Sbjct: 1 LDFIPSTIGCV-SACSVQPLGEEDSVSPSSSTASLSELKTKGN-YLRNSIESKLVVSRAN 58
Query: 139 AINNAEAGSE------LNLSDEL---DGSVRCPLCEVDISNLTEEQRHLHTNDCLXXXXX 189
A+N A+A S+ +NL DEL D SVRCPLCEVDISNLTEEQRHLHTN+CL
Sbjct: 59 ALNRADADSDSELDLLMNLCDELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDDVRF 118
Query: 190 XXXX-----------------XXXXXXQFAPKVSRVVDWLRDLGLGKYEDVFVREEVDWD 232
Q PKV+ VVDWLR LGL KYEDVFVREEVDWD
Sbjct: 119 TRLTFLPQFHYLVNFVAVVPDDNEKGAQQVPKVASVVDWLRGLGLNKYEDVFVREEVDWD 178
Query: 233 TLQWLTEEDLLSMGVTALGPRKKIVHALCEFRKGIAASNEKPEDALAEPRRNRNQNVKMQ 292
TLQWLTEEDLLSMG+ ALGPR+KIVHAL E RKG AA+NEK ED+ AEPRR RNQ VK++
Sbjct: 179 TLQWLTEEDLLSMGIAALGPRRKIVHALSELRKGDAAANEKHEDSSAEPRRIRNQKVKLK 238
Query: 293 PHRPERKVDGTSKPAANKKITEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNS 352
+ ERKVDGT KP ANK ITEYFPGFA+ KKVS +P E QE K+SG SGR HK KN+
Sbjct: 239 HDKSERKVDGTGKPVANKLITEYFPGFASKEKKVSASPGEPQEKKNSGLDSGRKHKSKNT 298
Query: 353 STNRKLRDVPKWCSIEGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCS 412
TNRKLRDVPKWC+++GTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCS
Sbjct: 299 PTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCS 358
Query: 413 SITARLVNMNIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLH 472
S+TARLVNMNIGIPYDKLH+LPLNQKVEIAG+DVTCLDANHCPGSIIILFQPPNGKAVLH
Sbjct: 359 SVTARLVNMNIGIPYDKLHVLPLNQKVEIAGVDVTCLDANHCPGSIIILFQPPNGKAVLH 418
Query: 473 TGDFRFSDELAINPVLRMCPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGT 532
TGDFRFS+E+A+NP++R+CP++TLILDTTYCNPQYDFPKQE+VIQFVIDA+QAE FNP T
Sbjct: 419 TGDFRFSEEMAVNPLMRICPINTLILDTTYCNPQYDFPKQESVIQFVIDAVQAETFNPKT 478
Query: 533 LFLIGSYTIGRVQYNTSLDIMLHTKQEKKGYSLRLLVRYEERYE 576
LFLIGSYTIG+ + + L K LR+L E + E
Sbjct: 479 LFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRILKCLELKEE 522
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 47/54 (87%), Gaps = 3/54 (5%)
Query: 568 LVRYEERYEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMISLMSS 621
++R+ YEVPYSEH SFTELK+FV+ +SP NIIPSVNNDGPES++AMISL+ S
Sbjct: 591 IIRW---YEVPYSEHSSFTELKEFVRVVSPDNIIPSVNNDGPESSDAMISLLLS 641
>Glyma09g25430.1
Length = 268
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/268 (70%), Positives = 218/268 (81%), Gaps = 2/268 (0%)
Query: 241 DLLSMGVTALGPRKKIVHALCEFRKGIAASNEKPEDALAEPRRNRNQNVKMQPHRPERKV 300
DLLSMG+ ALGPR+KIVHAL E RKG A +NEK ED+ AEP+R RNQ VK++ + ERKV
Sbjct: 1 DLLSMGIAALGPRRKIVHALSELRKGDAVANEKHEDSSAEPKRIRNQKVKLKHDKSERKV 60
Query: 301 DGTSKPAANKKITEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRD 360
DGT KP ANK +TEYF GFA+ KKVST+P E QE K+SG SGR HK KN+ TN L D
Sbjct: 61 DGTGKPVANKLMTEYFSGFASKEKKVSTSPGEPQEKKNSGLDSGRKHKSKNTPTNTMLYD 120
Query: 361 VPKWCSIEGTPFRVDAFKYLRGDCSHWFLTHFHLDH--YQGLTKSFNHGKIYCSSITARL 418
VPKWC+I+G+PFRVDAFKYLRGDCSHWFLTHFHLD Q T ++ + + L
Sbjct: 121 VPKWCAIQGSPFRVDAFKYLRGDCSHWFLTHFHLDSPCKQIFTIRIKLFQVMLAVCSHLL 180
Query: 419 VNMNIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRF 478
VNMNIGIPYDKLH+LPLN KVEIAG+DVTCLDANHCPGSIIILFQP NGKAVLHTGDFRF
Sbjct: 181 VNMNIGIPYDKLHVLPLNPKVEIAGVDVTCLDANHCPGSIIILFQPLNGKAVLHTGDFRF 240
Query: 479 SDELAINPVLRMCPVHTLILDTTYCNPQ 506
S+E+ +NP++R+CP++TLILDTTYCNPQ
Sbjct: 241 SEEMVVNPLMRICPINTLILDTTYCNPQ 268
>Glyma16g05020.2
Length = 505
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 325 KVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPKWCSIEGTPFRVDAFKY--LRG 382
+ S P+ +E +++ S R KG + NR R P + + GT F VDAF+Y + G
Sbjct: 133 RCSIFPDTGKEFENAKS--SRKRKG-SCGENRVTRSCPFYKKMPGTMFTVDAFRYGCVEG 189
Query: 383 DCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGIPYDKLHILPLNQKVEIA 442
CS +FLTHFH DHY GL+K ++HG IYCS +T RLV M + + +H L N++ I
Sbjct: 190 -CSAYFLTHFHCDHYGGLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNEEHVID 248
Query: 443 GIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDELAINPVLRMCPVHTLILDTTY 502
G+ VT L+ANHCPG+ +I F PNG+ LHTGDFR + +L V+ L LDTTY
Sbjct: 249 GVKVTLLEANHCPGAALIHFNLPNGQRYLHTGDFRACKLMQAYHLLVNQRVNVLYLDTTY 308
Query: 503 CNPQYDFPKQEAVIQFVIDAIQAE-AFNPGTLFLIGSYTIGR 543
CNP+Y FP +E V+ +V+ + +P TL ++G+Y+IG+
Sbjct: 309 CNPKYRFPSKEEVLNYVVKITKNHLKIHPRTLVVVGAYSIGK 350
>Glyma16g05020.1
Length = 505
Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 7/222 (3%)
Query: 325 KVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPKWCSIEGTPFRVDAFKY--LRG 382
+ S P+ +E +++ S R KG + NR R P + + GT F VDAF+Y + G
Sbjct: 133 RCSIFPDTGKEFENAKS--SRKRKG-SCGENRVTRSCPFYKKMPGTMFTVDAFRYGCVEG 189
Query: 383 DCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGIPYDKLHILPLNQKVEIA 442
CS +FLTHFH DHY GL+K ++HG IYCS +T RLV M + + +H L N++ I
Sbjct: 190 -CSAYFLTHFHCDHYGGLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNEEHVID 248
Query: 443 GIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDELAINPVLRMCPVHTLILDTTY 502
G+ VT L+ANHCPG+ +I F PNG+ LHTGDFR + +L V+ L LDTTY
Sbjct: 249 GVKVTLLEANHCPGAALIHFNLPNGQRYLHTGDFRACKLMQAYHLLVNQRVNVLYLDTTY 308
Query: 503 CNPQYDFPKQEAVIQFVIDAIQAE-AFNPGTLFLIGSYTIGR 543
CNP+Y FP +E V+ +V+ + +P TL ++G+Y+IG+
Sbjct: 309 CNPKYRFPSKEEVLNYVVKITKNHLKIHPRTLVVVGAYSIGK 350
>Glyma04g06090.1
Length = 74
Score = 124 bits (310), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/69 (79%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Query: 375 DAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGIPYDKLHILP 434
DAFK LRGDCS WFL HFH DHYQ LTKSFNHGKIYC S+TARLVNMNIGI YDKLH+
Sbjct: 1 DAFKCLRGDCSQWFLAHFHSDHYQSLTKSFNHGKIYCYSVTARLVNMNIGISYDKLHV-S 59
Query: 435 LNQKVEIAG 443
LNQKV++ G
Sbjct: 60 LNQKVDLLG 68
>Glyma12g11250.1
Length = 424
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 22/186 (11%)
Query: 387 WFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNI-GIPYDKLHILPLNQKVEIA--- 442
+FLTH H DH GLT S++H ++CS++TA+L+ G L IL +
Sbjct: 18 YFLTHLHSDHTHGLTPSWHHAPLFCSAVTAKLLPFKFPGFDLSLLRILHPGTTHTVTLPS 77
Query: 443 -GIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRF--------SDELAINPVLRMCP- 492
+ VT +DA HCPGSI++LF+ G +L+TGDFR+ + LR P
Sbjct: 78 LTLHVTVMDACHCPGSIMLLFRGDFG-CILYTGDFRWEATCERATKSRHVLRDALRHVPA 136
Query: 493 VHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGTLFLIGSYTIGR----VQYNT 548
V + LD TY NP YDFP + Q +ID I A +P +IG T+G+ V+ +
Sbjct: 137 VDVVHLDNTYSNPIYDFPPRHVAAQQIIDII---ASHPDHEVIIGINTLGKEDLLVEISR 193
Query: 549 SLDIML 554
+L IM+
Sbjct: 194 ALQIMI 199
>Glyma12g23050.1
Length = 148
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 441 IAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDELAINPVLRMCPVHTLILDT 500
I G+ VT L+ANHCPG+ +I F PNG+ LHTGDFR + +L V+ L LDT
Sbjct: 1 IDGVKVTLLEANHCPGAALIYFDLPNGQRYLHTGDFRACKLMQAYHLLVNQRVNVLYLDT 60
Query: 501 TYCNPQYDFPKQEAVIQFVIDAIQAEA-FNPGTLFLIGSYTIGR 543
TYCNP+Y FP +E V+ +V+ + +P TL ++G+Y+IG+
Sbjct: 61 TYCNPKYRFPSKEEVLNYVVKITKNHLKIHPRTLVVVGAYSIGK 104
>Glyma06g15880.1
Length = 553
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 81/171 (47%), Gaps = 18/171 (10%)
Query: 368 EGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGIPY 427
+G PF VD + H FLTH H DH +T ++ IY +++T ++
Sbjct: 7 KGLPFSVDTWTPSSSK-RHCFLTHAHKDHSSSITSHSSY-PIYSTNLTKTILLQQYPQLD 64
Query: 428 DKLHI-LPLNQKVEI-----AGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDE 481
L + + L Q + I A V+ DANHCPG+++ LF+ G +LHTGD R + E
Sbjct: 65 ASLFLNIELGQSLVIHDPAAAPFTVSAFDANHCPGAVMFLFEGKFGN-ILHTGDCRLTPE 123
Query: 482 LAINPVLRM---------CPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAI 523
+N + CP+ + LD T+ N P + + IQ VI+ I
Sbjct: 124 CLLNLPDKYVGRKGKEPRCPLDCVFLDCTFGNFSQGMPSKHSAIQQVINCI 174
>Glyma05g38440.1
Length = 276
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 211 WLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRKGIA 268
WL LGLG+Y VF EVD + L LT EDL MG++A+G R+K+ A+ + KG +
Sbjct: 219 WLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYTAIQKLGKGFS 276
>Glyma06g17430.1
Length = 262
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 211 WLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRKGIA 268
WL LGLG+Y VF EVD + L LT EDL MG++A+G R+K+ A+ + KG +
Sbjct: 205 WLNGLGLGRYAPVFEIHEVDDEVLPLLTLEDLKDMGISAVGSRRKMFCAIQKLGKGFS 262
>Glyma03g09660.1
Length = 207
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 208 VVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHAL 260
V ++LR LGL KY F EEVD L +T+EDL +MG+ +GPRKKI+ AL
Sbjct: 152 VDEFLRSLGLEKYLITFQAEEVDMTALNHMTDEDLKAMGI-PMGPRKKILLAL 203
>Glyma04g37670.1
Length = 254
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 211 WLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRK 265
WL LGLG+Y VF EVD + L LT EDL MG++A+G R+K+ A+ + K
Sbjct: 199 WLNGLGLGRYAPVFEIHEVDDEVLPLLTLEDLKDMGISAVGSRRKMFCAIQKLGK 253
>Glyma18g51850.1
Length = 246
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 208 VVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRK 265
V WL +LGL +Y +F EVD + L LT EDL MG+ A+G R+K+ A+ + RK
Sbjct: 186 VRSWLYELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLRK 243
>Glyma08g28950.1
Length = 263
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 208 VVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRK 265
V WL +LGL +Y +F EVD + L LT EDL MG+ A+G R+K+ A+ + RK
Sbjct: 203 VRSWLYELGLSRYAPMFEIHEVDDELLPMLTLEDLKDMGINAVGSRRKMYTAIQKLRK 260