Miyakogusa Predicted Gene

Lj1g3v1788140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1788140.1 Non Chatacterized Hit- tr|D7LA68|D7LA68_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,53.4,2e-19,PsbX,Photosystem II PsbX,CUFF.27929.1
         (123 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g05800.1                                                       170   3e-43
Glyma06g05810.1                                                       165   9e-42
Glyma09g08630.1                                                       111   2e-25
Glyma15g19100.1                                                        90   4e-19
Glyma09g07880.1                                                        86   1e-17

>Glyma04g05800.1 
          Length = 123

 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 107/124 (86%), Gaps = 4/124 (3%)

Query: 1   MASASVPMALSLSSVTHNKLNNPSSQSFFQPLPIRQ-NKTLFA-KPSSKSKHGIHASLKE 58
           MASASVPMALSLSSVT+N  N PSS++FF+PLP+RQ  +TLF  K  S SK  I+ASLKE
Sbjct: 1   MASASVPMALSLSSVTNN--NKPSSEAFFRPLPLRQPKRTLFTTKAVSNSKPQINASLKE 58

Query: 59  KAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFD 118
           KAVAGLTAAS+TASMV+PEVA+AAG + +PSLKNFLLSI AGGVVL AIF AVIGVSNFD
Sbjct: 59  KAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGVVLAAIFGAVIGVSNFD 118

Query: 119 PVKR 122
           PVKR
Sbjct: 119 PVKR 122


>Glyma06g05810.1 
          Length = 123

 Score =  165 bits (418), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 104/124 (83%), Gaps = 4/124 (3%)

Query: 1   MASASVPMALSLSSVTHNKLNNPSSQSFFQPLPIRQ-NKTLFA-KPSSKSKHGIHASLKE 58
           MASASVPMA SLSSV +N  N PSS++FF+PLP+RQ  +TLF  K  S SK  I+ASLKE
Sbjct: 1   MASASVPMAFSLSSVINN--NKPSSEAFFRPLPLRQPKRTLFTTKAVSNSKAQINASLKE 58

Query: 59  KAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFD 118
           KAVAGLTAAS+TASMV+PEVA+AAG + +PSLKNFLLSI AGG VL AIF AVIGVSNFD
Sbjct: 59  KAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGFVLVAIFGAVIGVSNFD 118

Query: 119 PVKR 122
           PVKR
Sbjct: 119 PVKR 122


>Glyma09g08630.1 
          Length = 124

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/126 (52%), Positives = 88/126 (69%), Gaps = 7/126 (5%)

Query: 1   MASAS-VPMALSLSSVTHNKLNNPSSQSFF-QPLPIRQ--NKTLFAKPSSKSKHGIHASL 56
           MAS S V +A+ ++  +  ++  PSS + F +PLP+R   +K + A      +  + AS+
Sbjct: 1   MASTSAVSLAMPVTYASQKRVLVPSSDALFLKPLPLRSYSSKAMAASKVPNGRFQVRASM 60

Query: 57  KEKAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSN 116
           KEK V GLTAA+ TASM+ P+VA AA   ++PSLKNFLLSIAAGGVV+ AI  AV+GVSN
Sbjct: 61  KEKVVTGLTAAAFTASMMAPDVAEAA---VSPSLKNFLLSIAAGGVVVAAIIGAVVGVSN 117

Query: 117 FDPVKR 122
           FDPVKR
Sbjct: 118 FDPVKR 123


>Glyma15g19100.1 
          Length = 119

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 92/124 (74%), Gaps = 6/124 (4%)

Query: 1   MASAS-VPMALSLSSVTHNKLNNPSSQSFFQPLPIRQNKTLFAKPSSKSKHGIHASLKEK 59
           MAS S V MA+ ++  +  ++  PSS +FF+PLP+R +K + A      +  + AS+KEK
Sbjct: 1   MASTSAVSMAMPVTYASQKRVV-PSSDAFFKPLPLRSSKAVTAS-KLNGRFQVRASMKEK 58

Query: 60  AVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFDP 119
            V GLTAA++TASM++P+VA AA   +TPSLKNFLLSIAAGGVV+ AI  AVIGVSNFDP
Sbjct: 59  VVTGLTAAALTASMMVPDVAEAA---VTPSLKNFLLSIAAGGVVVVAIIGAVIGVSNFDP 115

Query: 120 VKRA 123
           VKR+
Sbjct: 116 VKRS 119


>Glyma09g07880.1 
          Length = 119

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 91/124 (73%), Gaps = 6/124 (4%)

Query: 1   MASAS-VPMALSLSSVTHNKLNNPSSQSFFQPLPIRQNKTLFAKPSSKSKHGIHASLKEK 59
           MAS S V M + ++  +  ++  PSS +FF+PL +R +K + A  +S  +  +  S+KEK
Sbjct: 1   MASTSAVSMVMPVTYASQKRVV-PSSDAFFKPLTLRSSKVV-AASNSNGRFQVRTSMKEK 58

Query: 60  AVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFDP 119
            V GLTAA++TASM++P+VA AA   ++PSLKNFLLSIAAGGVV+ AI  AVIGVSNFDP
Sbjct: 59  VVTGLTAAALTASMMVPDVAEAA---VSPSLKNFLLSIAAGGVVVVAIIGAVIGVSNFDP 115

Query: 120 VKRA 123
           VKR+
Sbjct: 116 VKRS 119