Miyakogusa Predicted Gene
- Lj1g3v1785880.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v1785880.1 tr|G7J7M2|G7J7M2_MEDTR NADH-ubiquinone
oxidoreductase subunit-like protein OS=Medicago truncatula
GN,99.3,0,NDH1_NuoB,NADH-ubiquinone oxidoreductase, 20 Kd subunit;
NADH-PLASTOQUINONE OXIDOREDUCTASE,NULL; NAD,CUFF.27829.1
(143 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g05410.1 267 3e-72
Glyma04g05340.1 267 3e-72
Glyma14g10680.1 261 1e-70
Glyma14g10690.1 152 1e-37
Glyma18g16430.1 89 2e-18
Glyma20g21790.1 79 2e-15
Glyma06g36810.1 78 4e-15
Glyma07g23230.1 74 6e-14
Glyma15g30020.1 68 4e-12
Glyma10g25610.1 62 1e-10
Glyma20g25560.1 54 4e-08
>Glyma06g05410.1
Length = 213
Score = 267 bits (683), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 126/143 (88%), Positives = 128/143 (89%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
MNWAR GSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM
Sbjct: 71 MNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 130
Query: 61 APALRKVYDQMPEPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEAL 120
APALRKVYDQMPEPRWV+SMGSCAN CDRIVPVDIYVPGCPPTAEAL
Sbjct: 131 APALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 190
Query: 121 LYGLLQLQKKINRRKDFLHWWTQ 143
LYGLLQLQKKINRRKDFLHWWT+
Sbjct: 191 LYGLLQLQKKINRRKDFLHWWTK 213
>Glyma04g05340.1
Length = 213
Score = 267 bits (683), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 125/143 (87%), Positives = 128/143 (89%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
MNWAR GSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM
Sbjct: 71 MNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 130
Query: 61 APALRKVYDQMPEPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEAL 120
APALRKVYDQMPEPRWV+SMGSCAN CDRIVPVDIY+PGCPPTAEAL
Sbjct: 131 APALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEAL 190
Query: 121 LYGLLQLQKKINRRKDFLHWWTQ 143
LYGLLQLQKKINRRKDFLHWWT+
Sbjct: 191 LYGLLQLQKKINRRKDFLHWWTK 213
>Glyma14g10680.1
Length = 207
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/143 (87%), Positives = 127/143 (88%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
+NWARTGSIWPMTFGLACCAVEMMHTG ARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM
Sbjct: 65 LNWARTGSIWPMTFGLACCAVEMMHTGGARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 124
Query: 61 APALRKVYDQMPEPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEAL 120
APALRKVYDQMPEPRWVISMGSCAN CDRIVPVDIYVPGCPPTAEAL
Sbjct: 125 APALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEAL 184
Query: 121 LYGLLQLQKKINRRKDFLHWWTQ 143
LYGLLQLQKKINRRKDFL WWT+
Sbjct: 185 LYGLLQLQKKINRRKDFLWWWTR 207
>Glyma14g10690.1
Length = 211
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 93/175 (53%), Gaps = 54/175 (30%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
+NWA + SIWPM FGLA C +EMMHTGA YDLDRF IIFRPSP QS+CMIVAGTLTNKM
Sbjct: 37 LNWAHSRSIWPMMFGLAYCDMEMMHTGATYYDLDRFRIIFRPSPHQSNCMIVAGTLTNKM 96
Query: 61 APALR----------------------------KVYDQMPEPRWVISMGSCANXX----- 87
A LR KVYDQMPE RWVISMGSCAN
Sbjct: 97 AHVLRKKCVFGFKANKSTFESFSTEKSFIFPIEKVYDQMPEQRWVISMGSCANGERKHPT 156
Query: 88 ---------------------XXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALL 121
CDRIVPVDI + GCPPTAEALL
Sbjct: 157 ILVENSDYAPFPRYDNPLVPIVYYHYSYAVVRGCDRIVPVDINISGCPPTAEALL 211
>Glyma18g16430.1
Length = 80
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 46/65 (70%), Gaps = 11/65 (16%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
MNWAR GSIWPMTFGLA CA+EMMH GAA YDLDRF +IV TLTNKM
Sbjct: 26 MNWARHGSIWPMTFGLASCAIEMMHIGAAHYDLDRFV-----------SLIVVSTLTNKM 74
Query: 61 APALR 65
APALR
Sbjct: 75 APALR 79
>Glyma20g21790.1
Length = 164
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 44/73 (60%), Gaps = 13/73 (17%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
MNWAR IWPMTF L CAVEMMHTG YDLDRF +IV TLTNKM
Sbjct: 64 MNWARCDFIWPMTFSLPSCAVEMMHTGITHYDLDRFV-----------SLIVVYTLTNKM 112
Query: 61 APALRK--VYDQM 71
APALR +Y M
Sbjct: 113 APALRNLHIYKHM 125
>Glyma06g36810.1
Length = 60
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 36/45 (80%)
Query: 4 ARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD 48
AR SIWPMTFGLACC +M HT AA YDLDRF IIFRPSP QSD
Sbjct: 1 ARRSSIWPMTFGLACCTTKMTHTNAACYDLDRFDIIFRPSPHQSD 45
>Glyma07g23230.1
Length = 88
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 46/75 (61%), Gaps = 10/75 (13%)
Query: 1 MNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKM 60
MNWAR SIWPMTFGLACC VEMMHTG A L F P+P +I+ TLTN M
Sbjct: 24 MNWARCSSIWPMTFGLACCIVEMMHTGTA---LTSF---LGPAPAN---LIIVSTLTNNM 74
Query: 61 APALRKVYDQMPEPR 75
APAL K Y P R
Sbjct: 75 APALDK-YSLYPFSR 88
>Glyma15g30020.1
Length = 71
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 47/66 (71%)
Query: 11 PMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 70
P+ +G +CC +E + +R++ D +G++ R +P+Q+D ++ GT+T KMAP+L ++Y+Q
Sbjct: 6 PLLYGTSCCFIEFVSLIGSRFNFDHYGLVSRSNPQQADLVLTVGTITMKMAPSLIQLYEQ 65
Query: 71 MPEPRW 76
M + ++
Sbjct: 66 MSKAKY 71
>Glyma10g25610.1
Length = 44
Score = 62.4 bits (150), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 33/53 (62%), Gaps = 11/53 (20%)
Query: 12 MTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPAL 64
MTFGL C VEMMH G ARYDLDRF +I+ TLTNKMAPAL
Sbjct: 1 MTFGLTSCTVEMMHIGIARYDLDRF-----------VSLIIVNTLTNKMAPAL 42
>Glyma20g25560.1
Length = 175
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 48 DCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVD 107
+ ++ AGT+ KMAP+L ++Y++MPEP++VI++G+C +D
Sbjct: 86 NLILTAGTVIMKMAPSLVRLYEKMPEPKYVIAIGACTITGGGMFSTDSY---------MD 136
Query: 108 IYVPGCPPTAEALLYGLLQLQ 128
+Y+ GCPP +A++ + +L
Sbjct: 137 VYLSGCPPKPKAIIDVITKLH 157