Miyakogusa Predicted Gene

Lj1g3v1784380.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1784380.2 Non Chatacterized Hit- tr|G7L5G3|G7L5G3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,41.54,7e-18,coiled-coil,NULL; Transposase_28,Transposase
(putative), gypsy type; seg,NULL,CUFF.27818.2
         (448 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g20690.1                                                        59   1e-08
Glyma18g42750.1                                                        56   7e-08

>Glyma18g20690.1 
          Length = 435

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 82  YFYMYETFFSRLNIKLPFSDFECDVLRTLNVAPTQLHPNSWAYI 125
           +FYMY   F  L + LP + F+C +L   NVAP+QLHPNSWA +
Sbjct: 118 FFYMYRCLFEVLGLILPLTAFQCALLEDSNVAPSQLHPNSWAML 161


>Glyma18g42750.1 
          Length = 456

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 10/104 (9%)

Query: 39  SVKKLRSQLSLSYSKENAGKIIVEACRMSEPVCF----NPPPGALKEYFYMYETFFSRLN 94
           SV  L+ Q+ L+ S EN+ K++V+AC   +        N PP     +F+MY   F    
Sbjct: 39  SVIALQRQVKLA-SLENSCKLVVQACGNDDFPFLRDSSNSPP-----FFFMYRCLFEVFG 92

Query: 95  IKLPFSDFECDVLRTLNVAPTQLHPNSWAYIRAFILLCRNYKIN 138
           + LP + F+C +L  LN+A  +LHPNS A    F +L  N   N
Sbjct: 93  LILPLTAFQCVLLEHLNMASAKLHPNSIAIDNFFKVLTTNAMAN 136