Miyakogusa Predicted Gene

Lj1g3v1755630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1755630.1 tr|B9IBP6|B9IBP6_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_243812
PE=4,41.29,2e-17, ,CUFF.27761.1
         (165 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g05060.1                                                       206   1e-53
Glyma04g04990.1                                                       149   2e-36
Glyma11g04960.1                                                        55   4e-08

>Glyma06g05060.1 
          Length = 418

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 135/167 (80%), Gaps = 3/167 (1%)

Query: 1   MWMKELHKQMKPEFEIFGRNSFYLKD-SVQPDDFSPRLVDDTCSDDTPHRTYGSETTTSS 59
           MWM+ELHKQ KPEFEI GR+  Y +D + Q +DFSP L+DDT SDD P +TYG  TT S 
Sbjct: 253 MWMQELHKQTKPEFEISGRSVSYSRDNAAQHNDFSPDLLDDTYSDDMPSQTYGYRTT-SL 311

Query: 60  SMMADNEIEKYPVESSGTHFIDKSVTEEN-IVKTENKDLRSGGPSHMIIQDYGGDDDNEW 118
           SM++D E +K+ VESSGTHF DKSV E+N I+KTENKDL+ G PS +IIQDY  DD +EW
Sbjct: 312 SMLSDCETDKHMVESSGTHFTDKSVIEKNSIIKTENKDLKCGQPSQIIIQDYDDDDGDEW 371

Query: 119 PEEDSDLGGYVGTSLPLLNEEDISFSDLEDDDYDIKHVSSNTGSKLV 165
           PEEDSDLGGY GT+ P++NEEDISFSDLEDDDY IK VSS+TGSK+V
Sbjct: 372 PEEDSDLGGYGGTTHPMVNEEDISFSDLEDDDYGIKPVSSSTGSKVV 418


>Glyma04g04990.1 
          Length = 393

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/155 (60%), Positives = 113/155 (72%), Gaps = 16/155 (10%)

Query: 1   MWMKELHKQMKPEFEIFGRNSFYLKDSVQPDDFSPRLVDDTCSDDTPHRTYGSETTTSSS 60
           MWM+ELHKQ KPEFEIFGR++ Y +D  Q DDF+P L+DD  SDDTP++TYG  TT+ S 
Sbjct: 253 MWMQELHKQTKPEFEIFGRSASYSRDKAQHDDFTPNLLDDAYSDDTPNQTYGYRTTSLSM 312

Query: 61  MMADNEIEKYPVESSGTHFIDKSVTEEN-IVKTENKDLRSGGPSHMIIQDYGGDDDNEWP 119
           +             SG HF DKSV EEN I+KTENKDL+ G PS +IIQDY  DD+    
Sbjct: 313 I-------------SGMHFTDKSVIEENSIIKTENKDLKCGRPSQIIIQDYDDDDEWP-- 357

Query: 120 EEDSDLGGYVGTSLPLLNEEDISFSDLEDDDYDIK 154
           EEDSD+GGY GT+ P++NE+DISFSDLEDDDY IK
Sbjct: 358 EEDSDIGGYGGTTHPMVNEDDISFSDLEDDDYGIK 392


>Glyma11g04960.1 
          Length = 475

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 2/109 (1%)

Query: 46  TPHRTYGSETTTSSSMMADNEIEKYPVESSGTHFIDKSVTEENIVKTENKDLRSGGPSHM 105
            P +T  +E   S  ++++ E+EK+  +S     IDKSV +E  V    +   SG  +  
Sbjct: 298 APLQTSAAEAAPSV-VVSNVEMEKHATQSIVPEVIDKSVVKEATVNPSAEQSSSGSTNRF 356

Query: 106 IIQDYGGDDDNEWPEED-SDLGGYVGTSLPLLNEEDISFSDLEDDDYDI 153
           + + Y  D D+   EED S++ G  GT +   N+ED+SFSDLE+DD D+
Sbjct: 357 LDESYEDDADDWLKEEDTSEMVGPSGTPVHTGNDEDVSFSDLEEDDGDV 405