Miyakogusa Predicted Gene

Lj1g3v1732340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1732340.1 Non Chatacterized Hit- tr|B6UHS8|B6UHS8_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2 SV=1,52.33,2e-16,
,CUFF.27730.1
         (90 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g09910.1                                                       122   1e-28
Glyma17g35260.1                                                       118   1e-27

>Glyma14g09910.1 
          Length = 368

 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 68/89 (76%), Gaps = 7/89 (7%)

Query: 1   MVGQPQCSWLKSMVT------CTRISGEVTLNLPFDSSVPISSNGFSCWVRIDWKRDHKN 54
           MVGQP C WL+SMV       C RISGEVTL+L   + VP SSNGFSCWVRI+W+ +H N
Sbjct: 267 MVGQPLCPWLESMVNNNGGGECKRISGEVTLHLSDSTIVPTSSNGFSCWVRIEWQSEHNN 326

Query: 55  TSS-VNAFCDVMRLSCESKHYLFTWRFHT 82
             + VNAFCDVM+L+CES+ YLFTWRFHT
Sbjct: 327 KKNCVNAFCDVMKLACESRDYLFTWRFHT 355


>Glyma17g35260.1 
          Length = 364

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 67/88 (76%), Gaps = 6/88 (6%)

Query: 1   MVGQPQCSWLKSM---VTCTRISGEVTLNLPFDSSV-PISSNGFSCWVRIDWKRDHKNTS 56
           MVGQP C WL+SM   + C RISGEVTLNL   S+V P SSNGFSCWVRI+W  +H N  
Sbjct: 264 MVGQPVCPWLESMGNLLQCRRISGEVTLNLSDSSTVIPTSSNGFSCWVRIEWLSEHNNKK 323

Query: 57  S--VNAFCDVMRLSCESKHYLFTWRFHT 82
              +NAFCDVM+L+CES+ YLFTWRFHT
Sbjct: 324 KNCINAFCDVMKLACESRDYLFTWRFHT 351