Miyakogusa Predicted Gene

Lj1g3v1650100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1650100.1 Non Chatacterized Hit- tr|D7LE70|D7LE70_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,50.43,2e-16,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL,TC62021.path1.1
         (121 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g04100.1                                                       167   3e-42
Glyma06g04270.1                                                       122   9e-29
Glyma14g09080.1                                                        96   1e-20
Glyma08g35480.1                                                        60   6e-10

>Glyma04g04100.1 
          Length = 973

 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 97/121 (80%), Gaps = 3/121 (2%)

Query: 1   MXXXXXXXXGKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDR 60
           M        GKLGVEQELRKWRAE+EQRRKAGESG GV+NQ+KSPRGSFEG  + N FDR
Sbjct: 856 MEKAEKAKEGKLGVEQELRKWRAESEQRRKAGESGQGVINQSKSPRGSFEG--KANNFDR 913

Query: 61  AHGAASPAHNMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFPRVLMFFARRKTHSAKS 120
              AA+PAH ++SP+A EH  NDE G SSPE KHGKKKK+S+FPRVLMFFARRKTHS KS
Sbjct: 914 TSDAANPAHYLTSPKANEHADNDEGG-SSPESKHGKKKKKSIFPRVLMFFARRKTHSTKS 972

Query: 121 G 121
           G
Sbjct: 973 G 973


>Glyma06g04270.1 
          Length = 745

 Score =  122 bits (306), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 75/121 (61%), Gaps = 26/121 (21%)

Query: 1   MXXXXXXXXGKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDR 60
           M        GKLGVEQELR WRAE+EQRRKA ESG GV+NQ KSPRGSFEG +  N FDR
Sbjct: 651 MEKAEKAKEGKLGVEQELRNWRAESEQRRKASESGQGVVNQGKSPRGSFEGNQGVNNFDR 710

Query: 61  AHGAASPAHNMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFPRVLMFFARRKTHSAKS 120
                                     +S  E KHGKKKK+S+FPRVLMFFARRKTHS KS
Sbjct: 711 --------------------------TSDAESKHGKKKKKSIFPRVLMFFARRKTHSTKS 744

Query: 121 G 121
           G
Sbjct: 745 G 745


>Glyma14g09080.1 
          Length = 828

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 74/111 (66%), Gaps = 7/111 (6%)

Query: 10  GKLGVEQELRKWRAENEQ-RRKAGESGH-GVLNQN-KSPRGSFEGIKETNYFDRAHGAAS 66
           GKLGVEQELRKWRAE+EQ RR AGESG  GV+ Q+ K+P  SFE  KE N  D+      
Sbjct: 720 GKLGVEQELRKWRAEHEQQRRNAGESGQRGVVKQSSKNPEVSFERHKEANSIDQTRSGPI 779

Query: 67  PAHNMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFPRVLMFFARRKTHS 117
           PA   S+P+++ H     N  +S + K GKKKK+S FP VLMFF ++K HS
Sbjct: 780 PARYFSTPKSFSHS----NSVASADAKTGKKKKKSFFPWVLMFFGKKKAHS 826


>Glyma08g35480.1 
          Length = 586

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 24/111 (21%)

Query: 10  GKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDRAHGAASPAH 69
           GKL VE ELR WRAE E+++K GE       Q  +P                     PAH
Sbjct: 499 GKLAVEHELRTWRAEQEKQKKPGELND---EQTSTP-------------------TKPAH 536

Query: 70  NMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFP-RVLMFFARRKTHSAK 119
           + SSP+      N E GS+S +    KKKK+SLFP +V+MFFA++KTH  K
Sbjct: 537 DSSSPKGKVPSNNIEVGSAS-DKNKKKKKKKSLFPSKVVMFFAKKKTHPTK 586