Miyakogusa Predicted Gene

Lj1g3v1499460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1499460.1 tr|B9PDP4|B9PDP4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_585654 PE=4
SV=1,53.73,0.0000000002, ,CUFF.27408.1
         (250 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g17710.1                                                       400   e-112
Glyma04g37380.1                                                       377   e-105
Glyma04g37380.2                                                       299   2e-81
Glyma09g12270.1                                                        52   7e-07

>Glyma06g17710.1 
          Length = 540

 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/251 (79%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 2   DIKEYSASVSSCKFPVGIILFGESSSDMKLVLEKLDYAMPMDTIIVGDERGSF--VYCSG 59
           DIKEYSASVSS  FPVGIILFGE+SSDMKLVLEKLD+AMPMD +IVGDERGSF  V+ SG
Sbjct: 208 DIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDMVIVGDERGSFDFVHKSG 267

Query: 60  NDSRSIRGRTRDTEAVALVFAQDRDRSSGSIRFHIAFSNGVSTVGARYKAVSVKTNFDDC 119
           NDSR I  +  + EAVALVFAQDRDRS G+IRFH+A SNGVSTVG RYKA SVK+N  DC
Sbjct: 268 NDSRIICSKKGNIEAVALVFAQDRDRSLGTIRFHVALSNGVSTVGPRYKAASVKSNNADC 327

Query: 120 STWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIGAEKPMPRTSI 179
           STWLTARREGQQE LDGQSILL+IN+ L+N IESP+LYIGVIKHRK S GAEKPMPRT I
Sbjct: 328 STWLTARREGQQENLDGQSILLDINNLLDNHIESPDLYIGVIKHRKLSTGAEKPMPRTCI 387

Query: 180 AYHGVVGGDEEYLYVDGIGIKTGDIFQFYHSDPKAALGSLTEVHDALNNIKLEKNSRRFM 239
           AYHGVVGGDEEYLYVDGIGIKTGDIFQFY+SDP  AL SLT+VHDAL +I LEKNS+   
Sbjct: 388 AYHGVVGGDEEYLYVDGIGIKTGDIFQFYYSDPNTALASLTKVHDALKSIHLEKNSKSSK 447

Query: 240 CDGDNGVNVFG 250
            DGDN  NVFG
Sbjct: 448 GDGDNATNVFG 458


>Glyma04g37380.1 
          Length = 538

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 216/251 (86%), Gaps = 2/251 (0%)

Query: 2   DIKEYSASVSSCKFPVGIILFGESSSDMKLVLEKLDYAMPMDTIIVGDERGSF--VYCSG 59
           DIKEYSASVSS  FPVGIILFGE+SSDMKLVLEKLD+AMPMDT+IVGDERGSF  V+ SG
Sbjct: 206 DIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDTVIVGDERGSFDFVHKSG 265

Query: 60  NDSRSIRGRTRDTEAVALVFAQDRDRSSGSIRFHIAFSNGVSTVGARYKAVSVKTNFDDC 119
           NDSR I  +  + EAVALVFA+DR+RS G+IRFH+A SNGVSTVG RYKA SVK+N  DC
Sbjct: 266 NDSRIICSKKGNIEAVALVFARDRNRSLGTIRFHVALSNGVSTVGPRYKAASVKSNNADC 325

Query: 120 STWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIGAEKPMPRTSI 179
           STWLTARREGQQE LDGQSILL+IN+ L+N +ESP+L+IGVIKHRK S GAEKPMPRT I
Sbjct: 326 STWLTARREGQQENLDGQSILLDINNLLDNHVESPDLHIGVIKHRKLSTGAEKPMPRTCI 385

Query: 180 AYHGVVGGDEEYLYVDGIGIKTGDIFQFYHSDPKAALGSLTEVHDALNNIKLEKNSRRFM 239
           +YHGVVGGDEEYLYVDGIGIKTGD FQFY+SDP  AL SLT+VHDAL +IKLEK S+   
Sbjct: 386 SYHGVVGGDEEYLYVDGIGIKTGDFFQFYYSDPNIALASLTKVHDALKSIKLEKKSKSSK 445

Query: 240 CDGDNGVNVFG 250
            DGDN  NVFG
Sbjct: 446 GDGDNATNVFG 456


>Glyma04g37380.2 
          Length = 418

 Score =  299 bits (765), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/193 (76%), Positives = 167/193 (86%), Gaps = 2/193 (1%)

Query: 2   DIKEYSASVSSCKFPVGIILFGESSSDMKLVLEKLDYAMPMDTIIVGDERGSF--VYCSG 59
           DIKEYSASVSS  FPVGIILFGE+SSDMKLVLEKLD+AMPMDT+IVGDERGSF  V+ SG
Sbjct: 206 DIKEYSASVSSSPFPVGIILFGEASSDMKLVLEKLDHAMPMDTVIVGDERGSFDFVHKSG 265

Query: 60  NDSRSIRGRTRDTEAVALVFAQDRDRSSGSIRFHIAFSNGVSTVGARYKAVSVKTNFDDC 119
           NDSR I  +  + EAVALVFA+DR+RS G+IRFH+A SNGVSTVG RYKA SVK+N  DC
Sbjct: 266 NDSRIICSKKGNIEAVALVFARDRNRSLGTIRFHVALSNGVSTVGPRYKAASVKSNNADC 325

Query: 120 STWLTARREGQQELLDGQSILLEINDSLENQIESPELYIGVIKHRKFSIGAEKPMPRTSI 179
           STWLTARREGQQE LDGQSILL+IN+ L+N +ESP+L+IGVIKHRK S GAEKPMPRT I
Sbjct: 326 STWLTARREGQQENLDGQSILLDINNLLDNHVESPDLHIGVIKHRKLSTGAEKPMPRTCI 385

Query: 180 AYHGVVGGDEEYL 192
           +YHGVVG D + L
Sbjct: 386 SYHGVVGYDIKLL 398


>Glyma09g12270.1 
          Length = 229

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 23/111 (20%)

Query: 1   MDIKEYSASVSSCKFPVGIILFGESSSDMKL--VLEKL-----DY-------------AM 40
           +D ++ +     C+ P+ I +  ++SSDMKL  V  KL     DY             AM
Sbjct: 91  LDARKVAVRAWGCQ-PLYIGVVDDASSDMKLEKVRRKLGFCLVDYIIYLIISSFLVYHAM 149

Query: 41  PMDTIIVGDERGS--FVYCSGNDSRSIRGRTRDTEAVALVFAQDRDRSSGS 89
           PMD +IVGDERGS  FV+ SGNDSR I  +  + E +AL    D   S   
Sbjct: 150 PMDMVIVGDERGSFDFVHKSGNDSRIICSKKGNIEDLALPLQPDACHSCNC 200