Miyakogusa Predicted Gene

Lj1g3v1363170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1363170.1 tr|B6SIZ7|B6SIZ7_MAIZE Trafficking protein
particle complex protein 2 OS=Zea mays PE=4
SV=1,60.98,3e-18,Sedlin_N,Sedlin; no description,NULL; MBP-1
INTERACTING PROTEIN-2A,NULL; MBP-1 INTERACTING PROTEIN-2,CUFF.27180.1
         (87 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g16590.1                                                       160   3e-40
Glyma04g38460.1                                                       157   2e-39

>Glyma06g16590.1 
          Length = 135

 Score =  160 bits (404), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/81 (93%), Positives = 79/81 (97%)

Query: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60
          MATTACFIIVSRNDIPIYEAEVGVAAKRED+AQLHQFILHAALD+VQDLAWTTSAMYLKS
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDSAQLHQFILHAALDIVQDLAWTTSAMYLKS 60

Query: 61 VDRFNELVVSVYVTAGHILYM 81
          VDRFNELVVSVYVTAGH  +M
Sbjct: 61 VDRFNELVVSVYVTAGHTRFM 81


>Glyma04g38460.1 
          Length = 177

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/87 (88%), Positives = 83/87 (95%)

Query: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDVVQDLAWTTSAMYLKS 60
          MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALD+VQDLAWTTSAMYLKS
Sbjct: 1  MATTACFIIVSRNDIPIYEAEVGVAAKREDAAQLHQFILHAALDIVQDLAWTTSAMYLKS 60

Query: 61 VDRFNELVVSVYVTAGHILYMWESFYN 87
          VDRFNELVVSVYVTAG +  + +++YN
Sbjct: 61 VDRFNELVVSVYVTAGLLNCLVDTWYN 87