Miyakogusa Predicted Gene

Lj1g3v1353700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1353700.1 tr|I1JXZ9|I1JXZ9_SOYBN DNA polymerase OS=Glycine
max PE=3 SV=1,91.62,0,DNA POLYMERASE DELTA CATALYTIC SUBUNIT,NULL; DNA
POLYMERASE CATALYTIC SUBUNIT,NULL; DNA/RNA polymera,CUFF.27148.1
         (358 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g38800.2                                                       704   0.0  
Glyma06g16110.2                                                       703   0.0  
Glyma06g16110.1                                                       703   0.0  
Glyma03g39720.1                                                       144   1e-34
Glyma04g38800.1                                                       114   2e-25
Glyma01g39430.1                                                        91   2e-18

>Glyma04g38800.2 
          Length = 432

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/358 (93%), Positives = 344/358 (96%)

Query: 1   MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
           MIEHTKK+VEDKFT +NGY H AEVIYGDTDSVMVQFGVS+VEEAM LGREAAEYISGTF
Sbjct: 60  MIEHTKKIVEDKFTTVNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTF 119

Query: 61  IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
            +PIKLEFEKVY+PYLLISKKRYAGLFWTKPD FDKMD KGIETVRRDNCLLVKNLVNDC
Sbjct: 120 TKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDC 179

Query: 121 LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
           LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM
Sbjct: 180 LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 239

Query: 181 RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
           RKRDAATAPNVGDRVPYVIIKAAKGAK YEKSEDPI+VLENNIPIDP YYLENQISKPI+
Sbjct: 240 RKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPIM 299

Query: 241 RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
           RIFEPILKNAS ELLHGSHTRSISISTP N GI+KFAKKQLTCIGCKALL NG+HTLCSH
Sbjct: 300 RIFEPILKNASKELLHGSHTRSISISTPANSGILKFAKKQLTCIGCKALLGNGHHTLCSH 359

Query: 301 CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
           CKGRE ELYCKTV+QVS+LEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ
Sbjct: 360 CKGREAELYCKTVSQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 417


>Glyma06g16110.2 
          Length = 1085

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/358 (93%), Positives = 344/358 (96%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            MIEHTKKLVEDKFT LNGY H AEVIYGDTDSVMVQFGVS+VEEAM LGREAAE+ISGTF
Sbjct: 713  MIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTF 772

Query: 61   IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
             +PIKLEFEKVY+PYLLISKKRYAGLFWTKPD FDKMD KGIETVRRDNCLLVKNLVNDC
Sbjct: 773  TKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDC 832

Query: 121  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
            LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM
Sbjct: 833  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 892

Query: 181  RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
            RKRDAATAPNVGDRVPYVIIKAAKGAK YE+SEDPI+VLENNIPIDPHYYLENQISKPIL
Sbjct: 893  RKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPHYYLENQISKPIL 952

Query: 241  RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
            RIFEPILKNAS ELLHGSHTRSISISTP+N GI++FAKKQLTCIGCKALL  G HTLCSH
Sbjct: 953  RIFEPILKNASKELLHGSHTRSISISTPSNSGILRFAKKQLTCIGCKALLGKGYHTLCSH 1012

Query: 301  CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
            CKGRE ELYCKTV+QVS+LEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ
Sbjct: 1013 CKGREAELYCKTVSQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 1070


>Glyma06g16110.1 
          Length = 1085

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/358 (93%), Positives = 344/358 (96%)

Query: 1    MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
            MIEHTKKLVEDKFT LNGY H AEVIYGDTDSVMVQFGVS+VEEAM LGREAAE+ISGTF
Sbjct: 713  MIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTF 772

Query: 61   IQPIKLEFEKVYFPYLLISKKRYAGLFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDC 120
             +PIKLEFEKVY+PYLLISKKRYAGLFWTKPD FDKMD KGIETVRRDNCLLVKNLVNDC
Sbjct: 773  TKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDC 832

Query: 121  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 180
            LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM
Sbjct: 833  LHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERM 892

Query: 181  RKRDAATAPNVGDRVPYVIIKAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPIL 240
            RKRDAATAPNVGDRVPYVIIKAAKGAK YE+SEDPI+VLENNIPIDPHYYLENQISKPIL
Sbjct: 893  RKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPHYYLENQISKPIL 952

Query: 241  RIFEPILKNASNELLHGSHTRSISISTPTNGGIMKFAKKQLTCIGCKALLSNGNHTLCSH 300
            RIFEPILKNAS ELLHGSHTRSISISTP+N GI++FAKKQLTCIGCKALL  G HTLCSH
Sbjct: 953  RIFEPILKNASKELLHGSHTRSISISTPSNSGILRFAKKQLTCIGCKALLGKGYHTLCSH 1012

Query: 301  CKGREPELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 358
            CKGRE ELYCKTV+QVS+LEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ
Sbjct: 1013 CKGREAELYCKTVSQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQ 1070


>Glyma03g39720.1 
          Length = 1934

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 164/350 (46%), Gaps = 16/350 (4%)

Query: 23   AEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKR 82
            A+VIYGDTDS+ V     +V+E+ ++G E A  I+     P+ L+ EKVY P  L++KKR
Sbjct: 1563 AKVIYGDTDSMFVLLRGCTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKR 1622

Query: 83   YAGLFWTKPDKFDKM-DAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAI 141
            Y G  +  PD+ + + DAKGIETVRRD C  V  ++   L      +++     Y+    
Sbjct: 1623 YVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQNLLEVKTYLHRQW 1682

Query: 142  SDLLMNRMDLSLLVITKGL---TKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYV 198
              +L  R+ L   +  K +   T +     +  A + +A +    D    P   +R+PYV
Sbjct: 1683 KRILSGRICLKDFIFAKEVRLGTYSARISSLPPAAI-VATKAMTVDPRAEPRYAERIPYV 1741

Query: 199  IIKAAKGAKNYEKSEDPIFVLENNIP--IDPHYYLENQISKPILRIFEPI---LKNASNE 253
            +I    GA+  +   DP+ VL  + P  I+  YY+  QI   + R+F  +   L +  +E
Sbjct: 1742 VIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNHWFSE 1801

Query: 254  LLHGSHTRSISISTPTNGGIMKFAKKQLT--CIGCKALLSNGNHTLCSHCKGREPELYCK 311
            +   +   S   +  TN    +     L+  C+ C  L+   +  LC+ C   E      
Sbjct: 1802 MPRPTREASAKHTLTTNFHQTRIDYYYLSKHCVLCDRLV-QASARLCNQCSENEVAAATA 1860

Query: 312  TVAQVSDLEMLFGRLWTQCQECQGS---LHQDVLCTSRDCPIFYRRKKAQ 358
             +++ S LE     L   C  C G    L   V CTS  C +FY R+K Q
Sbjct: 1861 VISKTSKLEQEMQHLVAVCHHCGGGDRLLENGVKCTSISCLVFYERRKVQ 1910


>Glyma04g38800.1 
          Length = 786

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 58/64 (90%)

Query: 1   MIEHTKKLVEDKFTMLNGYGHTAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTF 60
           MIEHTKK+VEDKFT +NGY H AEVIYGDTDSVMVQFGVS+VEEAM LGREAAEYISGTF
Sbjct: 714 MIEHTKKIVEDKFTTVNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEYISGTF 773

Query: 61  IQPI 64
            + I
Sbjct: 774 TKVI 777


>Glyma01g39430.1 
          Length = 1434

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 16/238 (6%)

Query: 24   EVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISGTFIQPIKLEFEKVYFPYLLISKKRY 83
            EVIYGDTDS+M+  G+  +EEA K+     + ++  + + ++++ + +Y   LL+ KK+Y
Sbjct: 986  EVIYGDTDSIMIYSGLDEIEEANKIAVRVIQEVNKKY-KCLEIDLDGLYKRMLLLKKKKY 1044

Query: 84   AG--LFWTKPDKFDKMDAKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAI 141
            A   L +     ++ ++ KG++ VRRD  +L K L + CL +IL        V+ + N++
Sbjct: 1045 AAVKLLYKDGTPYEAIERKGLDIVRRDWSILAKELGDFCLTQILSGGSCEDVVESIHNSL 1104

Query: 142  ----SDLLMNRMDLSLLVITKGLTKTGDDY--EVKAAHVELAERMRKRDAATAPNVGDRV 195
                 ++   ++ L   VITK LTK  + Y       HV +A+R++++  ++  +VGD +
Sbjct: 1105 MKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTI 1164

Query: 196  PYVII-------KAAKGAKNYEKSEDPIFVLENNIPIDPHYYLENQISKPILRIFEPI 246
            PY+I         +A G     +  D +   +    ID  YYL  QI   + R+  PI
Sbjct: 1165 PYIICYEQGGSPGSAAGIAQRARHPDELKRDQGTWLIDIDYYLSQQIHPVVSRLCAPI 1222