Miyakogusa Predicted Gene

Lj1g3v1318330.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1318330.1 tr|A9SJQ1|A9SJQ1_PHYPA Class II RPD3 type histone
deacetylase protein OS=Physcomitrella patens subsp,56.25,5e-19,no
description,Histone deacetylase domain; SUBFAMILY NOT NAMED,NULL;
HISTONE DEACETYLASE,Histone
dea,NODE_39709_length_327_cov_88.611618.path1.1
         (126 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g32600.1                                                       166   4e-42
Glyma05g32600.2                                                        75   2e-14

>Glyma05g32600.1 
          Length = 417

 Score =  166 bits (421), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/131 (70%), Positives = 101/131 (77%), Gaps = 6/131 (4%)

Query: 1   MLLHNLPRSPAS-GSVSFLVGNGFF----CRKSQRVVNRCSFRISNSSLPSIEQLSDARV 55
           M L   PRSP+S G+  FLVG+        RK+QR   R S   S     SIEQLSDAR+
Sbjct: 1   MHLLKFPRSPSSFGNAFFLVGHHVLDIRVFRKNQRCF-RASISCSAVRNGSIEQLSDARL 59

Query: 56  IYSVAPSMGHNQESHPESHFRVPSIVNALEEMKLTPKFRGSEIIELQHFEPASVDDIASV 115
           IYSVAPSMGHNQESHPESHFRVP+IVNALEEM+LT KFRG E+IELQHFEPASVDDIASV
Sbjct: 60  IYSVAPSMGHNQESHPESHFRVPAIVNALEEMQLTSKFRGPEVIELQHFEPASVDDIASV 119

Query: 116 HARAYVFGLEK 126
           HARAYV GLEK
Sbjct: 120 HARAYVSGLEK 130


>Glyma05g32600.2 
          Length = 327

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 37/40 (92%)

Query: 87  MKLTPKFRGSEIIELQHFEPASVDDIASVHARAYVFGLEK 126
           M+LT KFRG E+IELQHFEPASVDDIASVHARAYV GLEK
Sbjct: 1   MQLTSKFRGPEVIELQHFEPASVDDIASVHARAYVSGLEK 40