Miyakogusa Predicted Gene

Lj1g3v1243790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1243790.1 CUFF.27037.1
         (115 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g35460.1                                                        82   9e-17
Glyma14g09710.1                                                        79   1e-15

>Glyma17g35460.1 
          Length = 124

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 53/81 (65%), Gaps = 6/81 (7%)

Query: 21  SPTLVSWFPDFVATTTSSGDKTTLIAVRRKLKENGNGI---RSNNKDDTGHMTLDDYHPI 77
           SPT  SWFPDF+AT     DK T IAV RKLKENG+G     S NKDD G +TLDDY+PI
Sbjct: 25  SPTSASWFPDFIATNCD--DKATSIAVSRKLKENGSGTIKSSSYNKDDIGQVTLDDYNPI 82

Query: 78  HPPPGSDPDEILRPRPVEHGS 98
            P P S    I  P P+EHG+
Sbjct: 83  DPVPSSSKASI-NPGPIEHGT 102


>Glyma14g09710.1 
          Length = 124

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 59/103 (57%), Gaps = 9/103 (8%)

Query: 2   KVSGFCVXXX---XXXXXXXXXSPTLVSWFPDFVATTTSSGDKTTLIAVRRKLKENGNGI 58
           KVSGF V               SPT  SWF D +AT  + GDK TLIAV RKLKE+ +  
Sbjct: 3   KVSGFFVLLLVVGATLSFLNFLSPTCASWFSDLIAT--NCGDKATLIAVSRKLKESDSST 60

Query: 59  ---RSNNKDDTGHMTLDDYHPIHPPPGSDPDEILRPRPVEHGS 98
              RSNNK D G +TL+DY+PI P P S    I  P P+EHG+
Sbjct: 61  IKSRSNNKGDIGQVTLNDYNPIDPVPSSSKASI-NPGPIEHGT 102