Miyakogusa Predicted Gene

Lj1g3v1181990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1181990.1 Non Chatacterized Hit- tr|J3N552|J3N552_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB10G2,47.89,0.000000000000006,SUBFAMILY NOT NAMED,NULL;
NONSENSE-MEDIATED MRNA DECAY PROTEIN 3,NULL; seg,NULL;
NMD3,NMD3,CUFF.26918.1
         (522 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g33380.1                                                       729   0.0  
Glyma18g04850.1                                                       717   0.0  
Glyma17g08880.1                                                       601   e-172
Glyma11g23820.1                                                        52   2e-06

>Glyma11g33380.1 
          Length = 510

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/486 (74%), Positives = 410/486 (84%), Gaps = 5/486 (1%)

Query: 1   MLGSLGMEIEAGMFSVPQTICNILCCICGIPMQPNAANMCVKCLSSQEDITEGLQKQIKI 60
           M GS GM  E+GMF V QTI ++LCC CGIPMQPNAANMCVKCL S+ DITEGL K++ +
Sbjct: 1   MFGSSGMAQESGMFMVNQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVL 60

Query: 61  YHCPECESYLQQQPKTWIKYLRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSK 120
            HCPECESYLQ  P++W+K L+LES ELL FCL  L+K L++NKVR+V A FIWTEPHS+
Sbjct: 61  VHCPECESYLQP-PRSWVK-LQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSR 118

Query: 121 RIKVNVKVQKEVLNGVILEQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQLRQHVSHRR 180
           R+KV VKVQKEVLNG ILEQSY VEYVQ EH+C+SC+R+ ANPDQWVA VQLRQHVSHRR
Sbjct: 119 RVKVKVKVQKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVAAVQLRQHVSHRR 178

Query: 181 TFFYLEQLILKHGVAATAIRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIRSNGDNRQL 240
           TFFYLEQLILKHG AATAIRIKQM++GIDF+FSN+SHG KFV+FI KV+P+RS  D +QL
Sbjct: 179 TFFYLEQLILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVSPVRSRHD-KQL 237

Query: 241 VSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDP 300
           VSHD KSN YNY+YT+SVEISPICREDLICLP  VA+SLGNIGPLVICTKVTNSI LLDP
Sbjct: 238 VSHDPKSNNYNYKYTFSVEISPICREDLICLPPRVAVSLGNIGPLVICTKVTNSIALLDP 297

Query: 301 FTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYALAVVEVAR 360
           FTLRHC +DA+QYW  SFKSLLTSRQL                   GGTKY LA  +VAR
Sbjct: 298 FTLRHCFIDADQYWRTSFKSLLTSRQL--VEYIVLDVETVSSEVTIGGTKYRLADAQVAR 355

Query: 361 VSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKKSYE 420
           VSDFGKNDTIF+IKTHLGHLLNPGDYALGYDLYGAN N++ELD YKG +P AIL+KKSYE
Sbjct: 356 VSDFGKNDTIFNIKTHLGHLLNPGDYALGYDLYGANSNDMELDKYKGHIPEAILIKKSYE 415

Query: 421 EKRLKKRGKPRSWKLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRFNLSLYQNI 480
           EK  KKRGKPRSWKLKSL MEVDDKGR+D DKM SEYEQF+ DLEENP++RFN+SLY+N 
Sbjct: 416 EKHQKKRGKPRSWKLKSLEMEVDDKGRVDEDKMVSEYEQFIQDLEENPEMRFNISLYRNK 475

Query: 481 EFQPSE 486
           E++PS+
Sbjct: 476 EYKPSD 481


>Glyma18g04850.1 
          Length = 504

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/480 (74%), Positives = 404/480 (84%), Gaps = 5/480 (1%)

Query: 7   MEIEAGMFSVPQTICNILCCICGIPMQPNAANMCVKCLSSQEDITEGLQKQIKIYHCPEC 66
           M  E+GMF V QTI ++LCC CGIPMQPNAANMCVKCL S+ DITEGL K++ + HCPEC
Sbjct: 1   MAQESGMFMVSQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPEC 60

Query: 67  ESYLQQQPKTWIKYLRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSKRIKVNV 126
           ESYLQ  P++W+K L+LES ELL FCL  L+K L++NKVR+V A FIWTEPHS+R+KV V
Sbjct: 61  ESYLQP-PRSWVK-LQLESKELLTFCLKKLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKV 118

Query: 127 KVQKEVLNGVILEQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQLRQHVSHRRTFFYLE 186
           KVQKEVLNG ILEQSY VEYVQ EH+C+SC+R+ ANPDQWVA VQLRQHVSHRRTFFYLE
Sbjct: 119 KVQKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVASVQLRQHVSHRRTFFYLE 178

Query: 187 QLILKHGVAATAIRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIRSNGDNRQLVSHDTK 246
           QLILKHG AATAIRIKQM++GIDF+FSN+SHG KFV+FI KVAP+RS  D +QLVSHD K
Sbjct: 179 QLILKHGAAATAIRIKQMEQGIDFFFSNRSHGVKFVEFIGKVAPVRSRHD-KQLVSHDPK 237

Query: 247 SNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVTNSIVLLDPFTLRHC 306
           SN YNY+YT+SVEISPICREDLICLP  VA  LGNIGPLVICTKVT+SI LLDPFTLRHC
Sbjct: 238 SNNYNYKYTFSVEISPICREDLICLPPRVAAGLGNIGPLVICTKVTSSIALLDPFTLRHC 297

Query: 307 SLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYALAVVEVARVSDFGK 366
            +DA+QYW ASFKSLLTSRQL                   GGTKY LA  +VARVSDFGK
Sbjct: 298 FIDADQYWRASFKSLLTSRQL--VEYIVLDVETVSSEVTIGGTKYRLADAQVARVSDFGK 355

Query: 367 NDTIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHAILVKKSYEEKRLKK 426
           NDTIF+IKTHLGHLLNPGDYALGYDLYGAN N++E D YKG +P AIL+KKSYEEK  KK
Sbjct: 356 NDTIFNIKTHLGHLLNPGDYALGYDLYGANSNDMEFDKYKGHIPEAILIKKSYEEKHQKK 415

Query: 427 RGKPRSWKLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRFNLSLYQNIEFQPSE 486
           RGKPRSWKLKSL MEVDDKGR+D DKM SEYEQF+ DLEENP++RFN+SLY+N E++PS+
Sbjct: 416 RGKPRSWKLKSLEMEVDDKGRVDQDKMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPSD 475


>Glyma17g08880.1 
          Length = 410

 Score =  601 bits (1549), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 307/425 (72%), Positives = 348/425 (81%), Gaps = 15/425 (3%)

Query: 53  GLQKQIKIYHCPECESYLQQQPKTWIKYLRLESDELLKFCLNMLKKKLSTNKVRVVDARF 112
           GL K + + HCPECESYLQ  P++W+K L+LES ELL FCL  L+K L++NKVR+V A F
Sbjct: 1   GLLKCLVLVHCPECESYLQP-PRSWVK-LQLESKELLTFCLKKLQKNLNSNKVRLVHAEF 58

Query: 113 IWTEPHSKRIKVNVKVQKEVLNGVILEQSYLVEYVQLEHLCDSCTRLAANPDQWVAVVQL 172
           IWTEPHS+R+KV VKVQKEVLNG ILEQSY VEYVQ EH+C+SC+R+ ANPDQWVA VQL
Sbjct: 59  IWTEPHSRRVKVKVKVQKEVLNGAILEQSYPVEYVQQEHMCESCSRVQANPDQWVAAVQL 118

Query: 173 RQHVSHRRTFFYLEQLILKHGVAATAIRIKQMDEGIDFYFSNKSHGNKFVQFIQKVAPIR 232
           RQHVSHRRTFFYLEQLILKHG AATAIRIKQM++GIDF+FSN+          +KVAP+R
Sbjct: 119 RQHVSHRRTFFYLEQLILKHGAAATAIRIKQMEQGIDFFFSNR----------RKVAPLR 168

Query: 233 SNGDNRQLVSHDTKSNTYNYRYTYSVEISPICREDLICLPHHVALSLGNIGPLVICTKVT 292
           S+ D +QLVSHD KSN YNY+YT+SVEISPICREDLIC+P  VA  LGNIGPLVICTKVT
Sbjct: 169 SHHD-KQLVSHDPKSNNYNYKYTFSVEISPICREDLICVPPRVAAGLGNIGPLVICTKVT 227

Query: 293 NSIVLLDPFTLRHCSLDANQYWGASFKSLLTSRQLXXXXXXXXXXXXXXXXXXXGGTKYA 352
           NSI LLDPFTLRHC +DA+QYW ASFKSLLTSRQL                   G TKY 
Sbjct: 228 NSIALLDPFTLRHCFIDADQYWRASFKSLLTSRQL--VEYIVLDVETVSSEVTIGDTKYR 285

Query: 353 LAVVEVARVSDFGKNDTIFSIKTHLGHLLNPGDYALGYDLYGANCNNIELDIYKGDLPHA 412
           LA  +VAR+SDFGKNDTIF+IKTHLGHLLNPGDYALGYDL GAN N++ELD YKG +P A
Sbjct: 286 LADAQVARISDFGKNDTIFNIKTHLGHLLNPGDYALGYDLCGANSNDMELDKYKGHIPEA 345

Query: 413 ILVKKSYEEKRLKKRGKPRSWKLKSLNMEVDDKGRIDPDKMNSEYEQFLNDLEENPDLRF 472
           IL+KKSYEEK  KKRGKPRSWKLKSL MEVDDKGR+D  KM SEYEQF+ DLEENP++RF
Sbjct: 346 ILIKKSYEEKHQKKRGKPRSWKLKSLEMEVDDKGRVDQGKMVSEYEQFIQDLEENPEMRF 405

Query: 473 NLSLY 477
           N+SLY
Sbjct: 406 NISLY 410


>Glyma11g23820.1 
          Length = 74

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 50/70 (71%), Gaps = 7/70 (10%)

Query: 72  QQPKTWIKY---LRLESDELLKFCLNMLKKKLSTNKVRVVDARFIWTEPHSKRIKVNVKV 128
           Q P++W +    ++  +D LLK     L+K L++NKVR+V A FIWTEPHS+R+KV VKV
Sbjct: 2   QPPRSWGQATAGVKGATDILLK----KLQKNLNSNKVRLVHAEFIWTEPHSRRVKVKVKV 57

Query: 129 QKEVLNGVIL 138
           QKEVLNG  L
Sbjct: 58  QKEVLNGAYL 67