Miyakogusa Predicted Gene

Lj1g3v1074620.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1074620.2 tr|C1EFG3|C1EFG3_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_109404,46.67,1e-18,no description,Ribosomal protein
S30Ae/sigma 54 modulation protein; Ribosome binding protein Y
(YfiA,CUFF.26709.2
         (182 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g14140.1                                                       233   6e-62
Glyma06g14140.2                                                       231   3e-61
Glyma04g40650.1                                                       229   2e-60

>Glyma06g14140.1 
          Length = 291

 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 120/152 (78%), Positives = 132/152 (86%), Gaps = 11/152 (7%)

Query: 34  SLTSTFWG--FKLKHAATSTVSAADNSTNTFRAV--RNSWDGPLSSVKLIIQGKNLDLTD 89
           +L++TF G    LK+AATST       +N  R++  R SWDGPLSSVKLIIQGKNL+LTD
Sbjct: 31  TLSTTFLGHIVTLKYAATST-------SNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTD 83

Query: 90  AVKQHVEDKVGKAVQKHSHIVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAE 149
           AVKQHVEDKVGKAVQKHSH+VRE+DVRLS RGGGEFGRGPRT RCEVTLFTKRHGVVRAE
Sbjct: 84  AVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAE 143

Query: 150 EDSETTYASIDLVSSIIQRKLRKIKEKVSDHG 181
           ED+E+TY SIDLVSSIIQRKLRKIKEKVSDHG
Sbjct: 144 EDAESTYGSIDLVSSIIQRKLRKIKEKVSDHG 175


>Glyma06g14140.2 
          Length = 248

 Score =  231 bits (589), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 131/150 (87%), Gaps = 7/150 (4%)

Query: 34  SLTSTFWG--FKLKHAATSTVSAADNSTNTFRAVRNSWDGPLSSVKLIIQGKNLDLTDAV 91
           +L++TF G    LK+AATST S    S +T    R SWDGPLSSVKLIIQGKNL+LTDAV
Sbjct: 31  TLSTTFLGHIVTLKYAATST-SNRGRSLST----RMSWDGPLSSVKLIIQGKNLELTDAV 85

Query: 92  KQHVEDKVGKAVQKHSHIVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEED 151
           KQHVEDKVGKAVQKHSH+VRE+DVRLS RGGGEFGRGPRT RCEVTLFTKRHGVVRAEED
Sbjct: 86  KQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEED 145

Query: 152 SETTYASIDLVSSIIQRKLRKIKEKVSDHG 181
           +E+TY SIDLVSSIIQRKLRKIKEKVSDHG
Sbjct: 146 AESTYGSIDLVSSIIQRKLRKIKEKVSDHG 175


>Glyma04g40650.1 
          Length = 291

 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 128/150 (85%), Gaps = 7/150 (4%)

Query: 34  SLTSTFWG--FKLKHAATSTVSAADNSTNTFRAVRNSWDGPLSSVKLIIQGKNLDLTDAV 91
           +L++TF G    LK+AATS  S    S     +   SWDGPLSSVKLIIQGKNL+LTDAV
Sbjct: 31  TLSTTFLGHTVTLKYAATSA-SIPPRSL----SAHMSWDGPLSSVKLIIQGKNLELTDAV 85

Query: 92  KQHVEDKVGKAVQKHSHIVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEED 151
           KQHVEDKVGKAVQKHSH+VRE+DVRLS RGGGEFGRGPRT RCEVTLFTKRHGVVRAEED
Sbjct: 86  KQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEED 145

Query: 152 SETTYASIDLVSSIIQRKLRKIKEKVSDHG 181
           +E+TY SIDLVSSIIQRKLRKIKEKVSDHG
Sbjct: 146 AESTYGSIDLVSSIIQRKLRKIKEKVSDHG 175