Miyakogusa Predicted Gene

Lj1g3v1073610.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1073610.2 tr|Q94JR0|Q94JR0_ARATH At1g32790 OS=Arabidopsis
thaliana PE=2 SV=1,42.86,0.000000000007,RRM,RNA recognition motif
domain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
description,Nu,CUFF.26724.2
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g14030.1                                                       174   1e-44
Glyma04g40760.1                                                       174   2e-44
Glyma04g40750.2                                                       153   4e-38
Glyma04g40750.1                                                       153   4e-38
Glyma06g14050.2                                                       153   4e-38
Glyma06g14050.1                                                       153   4e-38
Glyma08g18810.1                                                       150   3e-37
Glyma08g18810.3                                                       150   4e-37
Glyma15g40060.1                                                       148   1e-36
Glyma08g18810.2                                                       126   6e-30
Glyma06g14030.2                                                        69   1e-12
Glyma02g35640.1                                                        55   1e-08
Glyma09g33960.1                                                        47   5e-06

>Glyma06g14030.1 
          Length = 378

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/92 (90%), Positives = 88/92 (95%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEVQRLRLLGD++HSTRIAFVEF VAESAI A
Sbjct: 287 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAA 346

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGVILGSLPIRVSPSKTPVRSR+PR  MH
Sbjct: 347 LSCSGVILGSLPIRVSPSKTPVRSRAPRPTMH 378



 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AF+EF   E A  A
Sbjct: 190 MTRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEEGARAA 248

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           L+ SG +LG  P+RV PSKT +   +P
Sbjct: 249 LNLSGTMLGYYPLRVLPSKTAIAPVNP 275


>Glyma04g40760.1 
          Length = 380

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/92 (90%), Positives = 88/92 (95%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEVQRLRLLGD++HSTRIAFVEF VAESAI A
Sbjct: 289 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAA 348

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGVILGSLPIRVSPSKTPVRSR+PR  MH
Sbjct: 349 LSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 380



 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AFVEF   + A  A
Sbjct: 192 MIRRTVYVSDIDQLVTEEQLAGLFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEDGARAA 250

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           L+ SG +LG  P+RV PSKT +   +P
Sbjct: 251 LNLSGTMLGYYPLRVLPSKTAIAPVNP 277


>Glyma04g40750.2 
          Length = 369

 Score =  153 bits (387), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV RLRLLGD++HSTRIAFVEF +AESAI A
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGVILGSLPIRVSPSKTPVR R+PR PMH
Sbjct: 338 LSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 369



 Score = 70.5 bits (171), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AFVEF   E A  A
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEEGARAA 239

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           LS SG +LG  P+RV PSKT +   +P
Sbjct: 240 LSLSGTMLGYYPLRVLPSKTAIAPVNP 266


>Glyma04g40750.1 
          Length = 369

 Score =  153 bits (387), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV RLRLLGD++HSTRIAFVEF +AESAI A
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGVILGSLPIRVSPSKTPVR R+PR PMH
Sbjct: 338 LSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 369



 Score = 70.5 bits (171), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AFVEF   E A  A
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFVEFTDEEGARAA 239

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           LS SG +LG  P+RV PSKT +   +P
Sbjct: 240 LSLSGTMLGYYPLRVLPSKTAIAPVNP 266


>Glyma06g14050.2 
          Length = 369

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV RLRLLGD++HSTRIAFVEF +AESAI A
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGVILGSLPIRVSPSKTPVR R+PR PMH
Sbjct: 338 LSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 369



 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AF+EF   E A  A
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDDEGARAA 239

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           LS SG +LG  P+RV PSKT +   +P
Sbjct: 240 LSLSGTMLGYYPLRVLPSKTAIAPVNP 266


>Glyma06g14050.1 
          Length = 369

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/92 (88%), Positives = 87/92 (94%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV RLRLLGD++HSTRIAFVEF +AESAI A
Sbjct: 278 MCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAA 337

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           LSCSGVILGSLPIRVSPSKTPVR R+PR PMH
Sbjct: 338 LSCSGVILGSLPIRVSPSKTPVRPRAPRPPMH 369



 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AF+EF   E A  A
Sbjct: 181 MIRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDDEGARAA 239

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           LS SG +LG  P+RV PSKT +   +P
Sbjct: 240 LSLSGTMLGYYPLRVLPSKTAIAPVNP 266


>Glyma08g18810.1 
          Length = 296

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 80/92 (86%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKK++Q++VKNFFES CGEV RLRLLGD  HSTRIAFVEF +AESAI A
Sbjct: 205 MCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIA 264

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           L+CSG++LG+ PIRVSPSKTPVR R PR   H
Sbjct: 265 LNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH 296



 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD +   R AFVEF     A TAL+ 
Sbjct: 111 RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G +LG  P+RV PSKT +   +P
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNP 193


>Glyma08g18810.3 
          Length = 280

 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 80/92 (86%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKK++Q++VKNFFES CGEV RLRLLGD  HSTRIAFVEF +AESAI A
Sbjct: 189 MCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIA 248

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           L+CSG++LG+ PIRVSPSKTPVR R PR   H
Sbjct: 249 LNCSGMLLGTQPIRVSPSKTPVRPRVPRPASH 280



 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD +   R AFVEF     A TAL+ 
Sbjct: 95  RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 153

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G +LG  P+RV PSKT +   +P
Sbjct: 154 GGTVLGYYPVRVLPSKTAILPVNP 177


>Glyma15g40060.1 
          Length = 296

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 80/92 (86%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RT+YCTNIDKK++Q++VKNFFES CGEV RLRLLGDH HSTRIAFVEF +AESAI A
Sbjct: 205 MCARTVYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDHVHSTRIAFVEFAMAESAIIA 264

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSPRSPMH 92
           L+CSG++LG+ PIRVSPSKTPVR R  R   H
Sbjct: 265 LNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH 296



 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD +   R AFVEF     A TAL+ 
Sbjct: 111 RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G +LG  P+RV PSKT +   +P
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNP 193


>Glyma08g18810.2 
          Length = 285

 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 67/74 (90%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           MC+RTIYCTNIDKK++Q++VKNFFES CGEV RLRLLGD  HSTRIAFVEF +AESAI A
Sbjct: 205 MCARTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIA 264

Query: 61  LSCSGVILGSLPIR 74
           L+CSG++LG+ PIR
Sbjct: 265 LNCSGMLLGTQPIR 278



 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 4   RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSC 63
           RT+Y + ID+ +T+  +   F S CG+V   R+ GD +   R AFVEF     A TAL+ 
Sbjct: 111 RTVYVSEIDQHVTEERLAALFSS-CGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169

Query: 64  SGVILGSLPIRVSPSKTPVRSRSP 87
            G +LG  P+RV PSKT +   +P
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNP 193


>Glyma06g14030.2 
          Length = 323

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 1/87 (1%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
           M  RT+Y ++ID+ +T+  +   F + CG+V   R+ GD N   R AF+EF   E A  A
Sbjct: 190 MTRRTVYVSDIDQLVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEEGARAA 248

Query: 61  LSCSGVILGSLPIRVSPSKTPVRSRSP 87
           L+ SG +LG  P+RV PSKT +   +P
Sbjct: 249 LNLSGTMLGYYPLRVLPSKTAIAPVNP 275



 Score = 67.4 bits (163), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/31 (93%), Positives = 31/31 (100%)

Query: 1   MCSRTIYCTNIDKKLTQSDVKNFFESICGEV 31
           MCSRTIYCTNIDKKLTQ+DVK+FFESICGEV
Sbjct: 287 MCSRTIYCTNIDKKLTQADVKHFFESICGEV 317


>Glyma02g35640.1 
          Length = 258

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 14  KLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITALSCSGVILGSLPI 73
           ++T+  +   F + CG+V   R+ GD N   R AF+EF   E A  AL+ SG +LG  P+
Sbjct: 101 RVTEEQLAALFLN-CGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPL 159

Query: 74  RVSPSKTPVRSRSP 87
           RV PSKT +   +P
Sbjct: 160 RVLPSKTAIVPVNP 173


>Glyma09g33960.1 
          Length = 280

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 1  MCSRTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAITA 60
          M  +T+  +N+    T+ D+K FF S  G+++ + L   H+  ++IAF+ FK ++ A TA
Sbjct: 1  MTIKTVKVSNVSLGATEQDIKEFF-SFSGDIEYVEL-QSHDERSQIAFITFKDSQGAETA 58

Query: 61 LSCSGVILGSLPIRVS--------PSKTPVRSRSPRSP 90
          +  SG  +  +P+ +S        P+      R  R+P
Sbjct: 59 VLLSGATIVDMPVTISLDPDYQLPPAALASPVRETRTP 96