Miyakogusa Predicted Gene

Lj1g3v1019020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1019020.1 tr|A9TWI7|A9TWI7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_172369,29.3,0.0000000000001,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL,NODE_28861_length_1541_cov_106.963661.path2.1
         (201 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g13740.1                                                       308   3e-84
Glyma04g41110.1                                                       298   2e-81

>Glyma06g13740.1 
          Length = 2354

 Score =  308 bits (788), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/178 (82%), Positives = 162/178 (91%)

Query: 1    MDCFLALKMTLLLPYKTLQLECLSAVEDNIRQGIPEARSKDFELLVLILTSGILTSIMTD 60
            +DCFLALKMTLLLPYKTLQL+CL AVED+ RQGIP+ RSKD+ELL+LIL+SGILTSIM D
Sbjct: 2173 IDCFLALKMTLLLPYKTLQLQCLGAVEDSTRQGIPQTRSKDYELLILILSSGILTSIMID 2232

Query: 61   SSYGTTFSYLCYLVGNLSNQCQQALVPGRGFANSEDQENELLLFRRILFPYFISELVKAD 120
            S+YGT FSY+CYLVGNL NQCQQALV GRG  N+ED EN+LLLF RILFP FISELVKAD
Sbjct: 2233 STYGTIFSYICYLVGNLCNQCQQALVSGRGTNNNEDNENQLLLFTRILFPNFISELVKAD 2292

Query: 121  QHVLAGFLVTKFMHTNESLSLINIAGASLNRYLEKQLHMLQGNEFHVEKTCKTLKNTI 178
            QH+LAGFLVTKFMH+NESLSL NIAGASLNRYL+ QLHMLQ NEF VEKTCKTLKNT+
Sbjct: 2293 QHILAGFLVTKFMHSNESLSLFNIAGASLNRYLKMQLHMLQVNEFPVEKTCKTLKNTV 2350


>Glyma04g41110.1 
          Length = 510

 Score =  298 bits (764), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 168/201 (83%), Gaps = 18/201 (8%)

Query: 1   MDCFLALKMTLLLPYKTLQLECLSAVEDNIRQGIPEARSKDFELLVLILTSGILTSIMTD 60
           +DCFLALKM LLLPYKTL+L+CL A                  LL+LIL+SGILTSI+TD
Sbjct: 328 IDCFLALKMALLLPYKTLRLQCLGA------------------LLILILSSGILTSIITD 369

Query: 61  SSYGTTFSYLCYLVGNLSNQCQQALVPGRGFANSEDQENELLLFRRILFPYFISELVKAD 120
           S+YGT FSY+CYLVGNLSNQCQQALV GRG  N+ED EN+LLLF RILFP FISELVKAD
Sbjct: 370 STYGTIFSYICYLVGNLSNQCQQALVSGRGTNNNEDHENQLLLFTRILFPNFISELVKAD 429

Query: 121 QHVLAGFLVTKFMHTNESLSLINIAGASLNRYLEKQLHMLQGNEFHVEKTCKTLKNTISR 180
           QH+LAGFLVTKFMH+NESLSL+NIAGASLNRYLE QLH+LQ  EF VEKTCKTLKNT+ R
Sbjct: 430 QHILAGFLVTKFMHSNESLSLVNIAGASLNRYLEMQLHILQVKEFPVEKTCKTLKNTVGR 489

Query: 181 LRGKLSNLIQSTLPLLSASVS 201
           +RG+LS+LIQS LPLLSASVS
Sbjct: 490 MRGQLSSLIQSILPLLSASVS 510