Miyakogusa Predicted Gene

Lj1g3v1008920.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1008920.1 Non Chatacterized Hit- tr|I3SF98|I3SF98_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.69,0,MCT-1
PROTEIN,Translation-associated RNA-binding, predicted; seg,NULL; PUA
domain-like,PUA-like doma,CUFF.26672.1
         (181 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g13720.1                                                       346   7e-96
Glyma04g41130.2                                                       345   2e-95
Glyma04g41130.1                                                       338   2e-93
Glyma12g37040.1                                                        66   2e-11

>Glyma06g13720.1 
          Length = 181

 Score =  346 bits (888), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 172/181 (95%)

Query: 1   MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHXXX 60
           MFKKFSGE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNH   
Sbjct: 1   MFKKFSGEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNL 60

Query: 61  XXXXXXPLFFSIRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGG 120
                 PLFFS+RDGPYMPTLRLLHQYP+IMKKLQVDRGAIRFVLAGANIMCPGLTSPGG
Sbjct: 61  VLVNNVPLFFSVRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGG 120

Query: 121 VLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEQL 180
           VLDE+VGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKME+L
Sbjct: 121 VLDEDVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEKL 180

Query: 181 D 181
           D
Sbjct: 181 D 181


>Glyma04g41130.2 
          Length = 181

 Score =  345 bits (884), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 171/181 (94%)

Query: 1   MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHXXX 60
           MFKKFSGE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNH   
Sbjct: 1   MFKKFSGEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNL 60

Query: 61  XXXXXXPLFFSIRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGG 120
                 PLFFS+RDGPYMPTLRLLH YP+IMKKLQVDRGAIRFVLAGANIMCPGLTSPGG
Sbjct: 61  VLVNNVPLFFSVRDGPYMPTLRLLHLYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGG 120

Query: 121 VLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEQL 180
           VLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKME+L
Sbjct: 121 VLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEKL 180

Query: 181 D 181
           D
Sbjct: 181 D 181


>Glyma04g41130.1 
          Length = 183

 Score =  338 bits (866), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/178 (91%), Positives = 168/178 (94%)

Query: 4   KFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHXXXXXX 63
           +FSGE+VSAQNQVKASVQR+IRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNH      
Sbjct: 6   RFSGEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVLV 65

Query: 64  XXXPLFFSIRDGPYMPTLRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLD 123
              PLFFS+RDGPYMPTLRLLH YP+IMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLD
Sbjct: 66  NNVPLFFSVRDGPYMPTLRLLHLYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLD 125

Query: 124 EEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEQLD 181
           EEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKME+LD
Sbjct: 126 EEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNLHYLNDGLWKMEKLD 183


>Glyma12g37040.1 
          Length = 614

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 9/185 (4%)

Query: 1   MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGL-EPVLDDILPKKSPLIVAKCQNHXX 59
           MFKK    E  +  ++  + ++++R+SI +++  + +  LD +LP K+ + VAK QN   
Sbjct: 1   MFKK--AVEAKSHQRLSGADRKKLRRSIKQKFQRVSDSDLDALLPPKAEITVAKLQNRVH 58

Query: 60  XXXXXX-XPLFFSI--RDGPYMPTLRLLHQYPDIMKKLQVDRGAI-RFVLAGANIMCPGL 115
                   P+FF +  R     PT+  L   P+++    +  G + RFV+ GA++M PG+
Sbjct: 59  VYAVEGGFPMFFDVDGRGSDIFPTVYALWMVPELLPVFVLKGGEVSRFVIGGADLMFPGI 118

Query: 116 TSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKM-SAKDIKAINKGIGVDNLHYLNDGL 174
             P   L      E P A    G    +A+G T M SA+ +KA  +G  +   H   D L
Sbjct: 119 IVPPDGLPSFRAGE-PWAAKVPGNPAPIAVGSTTMSSAEALKAGLRGKALRITHCYRDLL 177

Query: 175 WKMEQ 179
           W+ ++
Sbjct: 178 WQYKE 182