Miyakogusa Predicted Gene

Lj1g3v0897620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0897620.1 tr|Q063L2|Q063L2_9SYNE NAD(P)H-quinone
oxidoreductase subunit M OS=Synechococcus sp. BL107 GN=ndhM
P,46.3,4e-19,seg,NULL; coiled-coil,NULL; NdhM,NAD(P)H-quinone
oxidoreductase subunit M,CUFF.26474.1
         (216 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g42380.1                                                       317   6e-87
Glyma06g12420.1                                                       315   2e-86

>Glyma04g42380.1 
          Length = 217

 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 157/217 (72%), Positives = 171/217 (78%), Gaps = 1/217 (0%)

Query: 1   MATSCSYMVSTKLSMLGWTGGGRTGLKNKRAFFISAQQQTTDVXXXXXXXXXXXXXXXXX 60
           MATSCSYMVSTKLSMLGW+GG R   +++RAF +SAQQQ+                    
Sbjct: 1   MATSCSYMVSTKLSMLGWSGGRRREARSRRAFLVSAQQQSDVKEAESLKVEEEQEQEQMQ 60

Query: 61  XXXMNPKGVKPRPAETQINVKSKNMSREYGGQWLSTATRHVRIYAAYIDPETWEFDQTQM 120
                PKG  PRP E Q+NVKSKNM REYGGQWLS ATRHVRIYAAYIDP T EFDQTQM
Sbjct: 61  TQTPKPKGTTPRPVEPQLNVKSKNMLREYGGQWLSCATRHVRIYAAYIDPVTCEFDQTQM 120

Query: 121 DKLTLLLDPQDEFVWNPETCNMVFSYFQELVDHYEGSQLTEYTLRLIGSDIEHYIRKLLY 180
           DKLTL+LDP DEFVWN ETCNMV+SYFQELVDHYEG+ LTEYTLRLIGSDIEHYIRK+LY
Sbjct: 121 DKLTLILDPTDEFVWNTETCNMVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLY 180

Query: 181 DGKLKYNMNARVLNFSMGKPRVML-NNDIKPEDTPEK 216
           DG +KYNMNARVLNFSMGKPR+M  NNDI+PED  EK
Sbjct: 181 DGAIKYNMNARVLNFSMGKPRIMFNNNDIQPEDATEK 217


>Glyma06g12420.1 
          Length = 218

 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/219 (73%), Positives = 174/219 (79%), Gaps = 4/219 (1%)

Query: 1   MATSCSYMVSTKLSMLGWTGGGRTGLKNKRAFFISAQQQTTDVXXXXXXXXXXXXXXXXX 60
           MATSCSYMVSTKLSMLGW+GG R   +N+RAF +SAQQQ+ DV                 
Sbjct: 1   MATSCSYMVSTKLSMLGWSGGRRREARNRRAFLVSAQQQS-DVQEAESVKVVEEEKEQEQ 59

Query: 61  XXXMNPK--GVKPRPAETQINVKSKNMSREYGGQWLSTATRHVRIYAAYIDPETWEFDQT 118
                PK  G  PRP E Q+NVKSKNM REYGGQWLS ATRHVRIYAAYIDP T EFDQT
Sbjct: 60  VQTQTPKPKGTTPRPVEPQLNVKSKNMLREYGGQWLSCATRHVRIYAAYIDPVTCEFDQT 119

Query: 119 QMDKLTLLLDPQDEFVWNPETCNMVFSYFQELVDHYEGSQLTEYTLRLIGSDIEHYIRKL 178
           QMDKLTL+LDP DEFVWNPETCNMV+SYFQELVDHYEG+ LTEYTLRLIGSDIEHYIRK+
Sbjct: 120 QMDKLTLILDPTDEFVWNPETCNMVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKM 179

Query: 179 LYDGKLKYNMNARVLNFSMGKPRVML-NNDIKPEDTPEK 216
           LYDG +KYNMNARVLNFSMGKPR+M  NNDI+PED  EK
Sbjct: 180 LYDGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDAIEK 218