Miyakogusa Predicted Gene

Lj1g3v0874340.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0874340.2 tr|B9IAZ0|B9IAZ0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_834991 PE=4
SV=1,29.62,0.00000000005,seg,NULL,CUFF.26460.2
         (392 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g12280.1                                                       155   1e-37
Glyma04g42500.1                                                        85   2e-16

>Glyma06g12280.1 
          Length = 516

 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 109/234 (46%), Positives = 129/234 (55%), Gaps = 14/234 (5%)

Query: 108 NKPASTSSSVYVDDIFGGMNNKQSVGVDDLLDKIGGLHANTKSSNEKGIDSDELIPGFGG 167
           N P STSS  YVDDIFGG++ K SVGVDDLLDKIGGL+ N KS N K    D+LIPGFG 
Sbjct: 99  NTPVSTSS--YVDDIFGGIHGK-SVGVDDLLDKIGGLNTNAKSPNAKSPAFDDLIPGFG- 154

Query: 168 SNVSNNGKTGFQMNKPHKPAATLKSPPAPANSDPFLVFETSASTGASDSFLDSLEHIXXX 227
             VSNN   G  MN P        +  A ++ DPFL+FET++S+ +S+SFLD+LE I   
Sbjct: 155 --VSNN---GVGMNNPSVTPNKPAAAAAASHDDPFLIFETASSSPSSESFLDALEQI--- 206

Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDELEDFAMGQVHNNA-SKKANVNTG 286
                                             IDELEDFAMG    NA S+KANV   
Sbjct: 207 -SKLNNSKGTKGGSPSLKSPPKPMSKVNSLSVSTIDELEDFAMGGTQTNASSRKANVKAA 265

Query: 287 EIKQNLAAKTNRDKGAPAARTNKLNDVDDLEXXXXXXXXXXXVPKSRAATMVKV 340
           E KQNLAA+ N  K  PAA+ N+ N VDDLE           VPKSR  TM ++
Sbjct: 266 ETKQNLAARMNNGKRVPAAKVNQANGVDDLESFFSMGSRSSSVPKSRTPTMDRM 319



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 39/53 (73%), Gaps = 4/53 (7%)

Query: 1  MDEFGVLTERYGLKPQGKSAPMASSKRSNHDSGSNLKPSQ----NGSRSPQHS 49
          MDEFGVLTE++GLKPQGKSAPMA +KR  + + S  +P+     NGS S Q+S
Sbjct: 1  MDEFGVLTEKFGLKPQGKSAPMARAKRPPNVADSQTRPNPKFPLNGSPSHQNS 53


>Glyma04g42500.1 
          Length = 340

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/192 (39%), Positives = 89/192 (46%), Gaps = 36/192 (18%)

Query: 108 NKPASTSSSVYVDDIFGGMNNKQSVGVDDLLDKIGGLHANTKSSNEKGIDSDELIP-GFG 166
           NKP S SS  YVDDIFGGM+ K SVGVDDLLDKIGG              +  LIP  F 
Sbjct: 86  NKPVSASS--YVDDIFGGMHEK-SVGVDDLLDKIGG-------------QTLSLIPYKFT 129

Query: 167 GSNVSNNGKTGFQMNKPHKPAATLKSPPAPANSDPFLVFETSASTGASDSFLDSLEHIXX 226
              +        Q+                   DPFL+FET++S+ +S+SFL++LE I  
Sbjct: 130 CITICIFRIGWCQLFY--------------FCDDPFLIFETASSSASSESFLNALEQI-- 173

Query: 227 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDELEDFAMGQVHNNA-SKKANVNT 285
                                              IDELEDFAMG    NA S+KANVN 
Sbjct: 174 --SRSNNSKGTKGGSPSLKSPPKPMSKVNRPSVSTIDELEDFAMGGAQTNASSRKANVNA 231

Query: 286 GEIKQNLAAKTN 297
            E KQNLAA+ N
Sbjct: 232 AETKQNLAARMN 243



 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 3/46 (6%)

Query: 1  MDEFGVLTERYGLKPQGKSAPMASSKRSNHDSGSNLKPSQNGSRSP 46
          MDEFGVLTER+GLKPQGKSAPMA +KR  + + S  +P+   S+SP
Sbjct: 1  MDEFGVLTERFGLKPQGKSAPMARAKRPPNVADSQTRPN---SKSP 43