Miyakogusa Predicted Gene
- Lj1g3v0816040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0816040.1 Non Chatacterized Hit- tr|H3DKS9|H3DKS9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,29.58,0.000000000007,TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology
domain; TRAM, LAG1 and CLN8 homology domains.,TRAM/LAG1/CLN8
,CUFF.26375.1
(276 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma06g11910.1 417 e-117
Glyma04g42850.1 380 e-105
Glyma18g35950.1 142 5e-34
>Glyma06g11910.1
Length = 278
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/273 (76%), Positives = 223/273 (81%), Gaps = 1/273 (0%)
Query: 4 NKVEAFFSTTLILWLCSLSFHILFNHRTHLLYVLAGSFFYQTANSLIRFFFSKPTDPLFV 63
N VE FF TLILWL SL F I FN R LL V+AG FFYQT+N LIRFFFS DPLFV
Sbjct: 7 NTVETFFLATLILWLASLCFQIFFNKRWELLSVIAGCFFYQTSNCLIRFFFSTHKDPLFV 66
Query: 64 NTAVSLLHSAVTSTSVIFILSKQWLSNGSSGMFDHSQLVEGTWPWAFEALSFSCGYFAYD 123
NT+VSLLHS TS SVIFIL ++ L NG SGMFDHS+LVE WPWAFEALSFSCGYFAYD
Sbjct: 67 NTSVSLLHSLFTSASVIFILFRE-LCNGPSGMFDHSKLVEDAWPWAFEALSFSCGYFAYD 125
Query: 124 QWDMLRFRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKVR 183
QWDMLR+RLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKVR
Sbjct: 126 QWDMLRYRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKVR 185
Query: 184 RMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEKGVELPMALFGMA 243
RMAGVRDAKS +V+LEWFLNWVTF VAR A HILIT KLI+DAHKFEKG+ELP+AL GMA
Sbjct: 186 RMAGVRDAKSILVRLEWFLNWVTFFVARSAPHILITAKLIKDAHKFEKGMELPLALCGMA 245
Query: 244 GMXXXXXXXXXXXXKAFKREKKSQQANHRQHHE 276
GM KAFKRE+KSQ N H E
Sbjct: 246 GMNLLNIGLGIDLLKAFKRERKSQLGNLHHHRE 278
>Glyma04g42850.1
Length = 288
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/274 (74%), Positives = 220/274 (80%), Gaps = 1/274 (0%)
Query: 4 NKVEAFFSTTLILWLCSLSFHILFNHRTHLLYVLAGSFFYQTANSLIRFFFS-KPTDPLF 62
N VE FF TLILW SL F IL N R LL V+AGS FYQT+N LIRFF K D LF
Sbjct: 15 NTVETFFLATLILWFASLCFQILLNKRWELLSVIAGSIFYQTSNCLIRFFSPHKDKDALF 74
Query: 63 VNTAVSLLHSAVTSTSVIFILSKQWLSNGSSGMFDHSQLVEGTWPWAFEALSFSCGYFAY 122
VNT+VSLLHS +TS+SVIFIL ++ LSNG SGM DHSQLVE W WAFEALSFSCGYFAY
Sbjct: 75 VNTSVSLLHSLLTSSSVIFILFRELLSNGPSGMSDHSQLVEDAWSWAFEALSFSCGYFAY 134
Query: 123 DQWDMLRFRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKV 182
DQWDML +RLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLH+RKV
Sbjct: 135 DQWDMLHYRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHLRKV 194
Query: 183 RRMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDAHKFEKGVELPMALFGM 242
RRMAG+RDAKS +VKLEWFLNWVTF VAR H+LIT KLI+DA+KFEKG+ELP+AL GM
Sbjct: 195 RRMAGIRDAKSILVKLEWFLNWVTFFVARSVPHVLITAKLIKDAYKFEKGMELPLALLGM 254
Query: 243 AGMXXXXXXXXXXXXKAFKREKKSQQANHRQHHE 276
AGM KAFKRE+KSQQ N H E
Sbjct: 255 AGMNLLNIGLGIDLLKAFKRERKSQQGNLHHHRE 288
>Glyma18g35950.1
Length = 108
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 84/109 (77%), Gaps = 2/109 (1%)
Query: 167 TLICELHSIFLHVRKVRRMAGVRDAKSSIVKLEWFLNWVTFLVARFASHILITVKLIRDA 226
+++ +LHSIFLH+RKVRRMAG+RDAKS +VKLEWFLNWVTF VAR HILIT KLI+D
Sbjct: 1 SVMVQLHSIFLHLRKVRRMAGIRDAKSILVKLEWFLNWVTF-VARSVPHILITAKLIKDT 59
Query: 227 HKFEKGVELPMALFGMAGMXXXXXXXXXXXXKAFKREKKSQQANHRQHH 275
+KFEKG+ELP+AL GMAGM KAF RE++SQQ N QHH
Sbjct: 60 YKFEKGMELPLALLGMAGMNLLNIGLGIDLLKAFMRERRSQQGN-LQHH 107